DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sec24CD and SEC24C

DIOPT Version :9

Sequence 1:NP_001259918.1 Gene:Sec24CD / 33409 FlyBaseID:FBgn0262126 Length:1231 Species:Drosophila melanogaster
Sequence 2:XP_011538682.1 Gene:SEC24C / 9632 HGNCID:10705 Length:1117 Species:Homo sapiens


Alignment Length:1232 Identity:550/1232 - (44%)
Similarity:721/1232 - (58%) Gaps:202/1232 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 YGPPPTQFQQQPQFG---APPPNSGGWPP-----------------------------QQQQLPQ 38
            |..|...:||.|..|   |||  |.|.||                             |.|:||.
Human    44 YNGPVPGYQQTPPQGMSRAPP--SSGAPPASTAQAPCGQAAYGQFGQGDVQNGPSSTVQMQRLPG 106

  Fly    39 QQPPQQQLPPQQQQQ---QPQYGAPPPTSAASQPYLNGNYQQQLATSMGGLSVGGGVGGANPLKP 100
            .||....|.|...|.   || || ||||||            |:||.:.|:.:.|.|        
Human   107 SQPFGSPLAPVGNQPPVLQP-YG-PPPTSA------------QVATQLSGMQISGAV-------- 149

  Fly   101 PLPQGAPAAAAPPPTGFNQFNSNAAPPPTNNNNAAFGAPPPTQAGSYVNGALPPSSTPQSVASGI 165
                    |.|||.:|.. |.     |||:..:|:...|.....|||..|..||.|..|      
Human   150 --------APAPPSSGLG-FG-----PPTSLASASGSFPNSGLYGSYPQGQAPPLSQAQ------ 194

  Fly   166 NQMSLNSATLAGLPHMPPPKAATPGAAPGQPPIPAAGSTSQPPLPGQPPLPGQPPFSGQIPTSQP 230
                       |.|.:..|:.:.|..|....| ||:|....|.:.| |.||||            
Human   195 -----------GHPGIQTPQRSAPSQASSFTP-PASGGPRLPSMTG-PLLPGQ------------ 234

  Fly   231 APSPYGVPS-SRPGQPQLPPGATPPTYTQPG-LPPQQQQGIPPLQQPGIPQQQPGFPPQQPGLPP 293
               .:|.|| |:|.....||.|.||.....| |.|     :||:..|    ||||:.|||.|   
Human   235 ---SFGGPSVSQPNHVSSPPQALPPGTQMTGPLGP-----LPPMHSP----QQPGYQPQQNG--- 284

  Fly   294 LSQPGLPPQPGAPYGAPQQGGYSGGFPGQAPGGFPGAPPPLPGQQAAAPPQFGAPQPGYPGQQPG 358
                ...|..|      .|..|.|.:|                    |.|.||:           
Human   285 ----SFGPARG------PQSNYGGPYP--------------------AAPTFGS----------- 308

  Fly   359 YPPQPGQQPMPGYPPQPGQQLGGPGYPPQ---PGAGFPGQPGRPGFNQPPMPGAGNMYQQAPQAR 420
               |||       ||||        .||:   |.|             .|.|....:..|.....
Human   309 ---QPG-------PPQP--------LPPKRLDPDA-------------IPSPQLSELPPQQKTRH 342

  Fly   421 RLDPDQMPNPIQVMIENQRLSGG--PFVTNQPGLLPPLVTTKFVVHDQGNSSPRFLRSSLYCIPN 483
            |:|||.:|:|||| ||:.|.:.|  ||||...|.:||||||.|:|.||||:|||::|.:.|.||.
Human   343 RIDPDAIPSPIQV-IEDDRNNRGTEPFVTGVRGQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPC 406

  Fly   484 TGDLLKTTALPLTLNISPLAKVGEGEMEPPIVNFGEMGPIRCNRCKAYMSPNMQFVDAGRRFQCL 548
            |.|:.|...:||...|.|||::...|..|.:|:.||.||:|||||||||.|.|||::.||||||.
Human   407 TSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCC 471

  Fly   549 MCKVTSEVHQNYYQHLDHTGQRVDKHERPELLLGTYEFLATKDYCRNNTPPEVPAFIFIIDVSYN 613
            .|...::|...|:|||||||:|||.::||||.||:||||||.|||:||..|..|||||:||||||
Human   472 FCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYN 536

  Fly   614 TVKSGLVHLLCSQIKNILKHLPVDQGQDKSKVRVGFITYNSTVHFYNIKSSLAQPQMMVVGDVQE 678
            .:::|||.|||.::|::|..||.:.|.::|.:||||:|||..:||||:||||||||||||.||.:
Human   537 AIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVAD 601

  Fly   679 MFMPLLDGFLCHPEESAAVIDALMEEIPRMFADTKETETILYPAIQAGLEALKASNAAGKLLVFN 743
            ||:|||||||.:..||.|||.:|:::||.|||||:||||:..|.||||:|||||:..||||.:|:
Human   602 MFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFH 666

  Fly   744 STLPIAEAPGKLKNRDDRKLLGTDKEKTVLTPQTTAYNTLGQECVQQGCSVDLFVFNNAYIDLAT 808
            ::||||||||||||||||||:.||||||:..|||.||.||.:|||.|||.||||:|.|.|:|:||
Human   667 TSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVAT 731

  Fly   809 IGQVSRLTGGEVFKYTYFQADVDGKRLIQDIIKNVSRPIAFDAVMRVRTSAGIRPTEFYGHFFMS 873
            :..|.:||||.|:||..||.:.|.:|.:.|:.::|.:.:.||||||||||.|||..:|:|.|:||
Human   732 LSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAFYMS 796

  Fly   874 NTTDVELASIDATKSISIEIKHDDKLAPEENVYLQVALLYTSCSGQRRLRILNLALRVTTTIADV 938
            ||||||||.:|..|::::|.||||:|..|....||.|||||||:|||||||.||||...|.:||:
Human   797 NTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCCTQLADL 861

  Fly   939 FKCCDLDAMMLFFAKQACFKLMEHSPKQVKDNLIHRSAQILACYRKHCTSPTSAGQLILPECLKL 1003
            ::.|:.|.::.:.||.|...::....|.|:|.||.:.|||||||||:|.||:||||||||||:||
Human   862 YRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAGQLILPECMKL 926

  Fly  1004 LPLYASCLLKNDAISGGSDMTLDDRSYVIQFILSMDLNQSVSYLYPRFIPIHNVVPEETDLPTPV 1068
            ||:|.:|:||:|.:..|:::|.|||:||.|.:.|||:.::..:.|||.:|:.....|.|..|..|
Human   927 LPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAV 991

  Fly  1069 RCTHEKTQEDGAYILENGVHLFVWLGQALSPDFVQSVFGVQGLQQIALERFNIVP--ETPLAKRI 1131
            |.:.|:......|:||||::||:|:|.::....|||:|.|....||. ...:::|  :.||:|::
Human   992 RASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQIT-SGLSVLPVLDNPLSKKV 1055

  Fly  1132 HGILEQIMKERSRYMRITWLRQNDKLESVFRHFLVEDRGTDGSASYVDFLCHMHKEIKDLLS 1193
            .|:::.:..:|||||::|.::|.||:|.:|:||||||:...|.||||||||||||||:.|||
Human  1056 RGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS 1117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec24CDNP_001259918.1 COG5028 395..1190 CDD:227361 429/798 (54%)
zf-Sec23_Sec24 522..559 CDD:282641 22/36 (61%)
Sec24-like 599..847 CDD:238756 151/247 (61%)
Sec23_BS 848..932 CDD:285301 55/83 (66%)
Sec23_helical 950..1043 CDD:282646 50/92 (54%)
Gelsolin 1061..1135 CDD:279020 26/75 (35%)
SEC24CXP_011538682.1 Gly-rich_Ago1 11..105 CDD:289530 15/62 (24%)
BAT2_N <142..240 CDD:284431 39/153 (25%)
COG5028 323..1113 CDD:227361 430/804 (53%)
zf-Sec23_Sec24 445..482 CDD:282641 22/36 (61%)
Sec24-like 522..781 CDD:238756 159/258 (62%)
Sec23_BS 771..854 CDD:285301 55/82 (67%)
Sec23_helical 870..966 CDD:282646 50/95 (53%)
Gelsolin 984..1059 CDD:279020 26/75 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 322 1.000 Domainoid score I1221
eggNOG 1 0.900 - - E1_COG5028
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3615
Inparanoid 1 1.050 960 1.000 Inparanoid score I331
Isobase 1 0.950 - 0 Normalized mean entropy S1741
OMA 1 1.010 - - QHG53542
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001889
OrthoInspector 1 1.000 - - otm40824
orthoMCL 1 0.900 - - OOG6_101536
Panther 1 1.100 - - LDO PTHR13803
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1962
SonicParanoid 1 1.000 - - X1423
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.810

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