DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sec24CD and Sec24b

DIOPT Version :9

Sequence 1:NP_001259918.1 Gene:Sec24CD / 33409 FlyBaseID:FBgn0262126 Length:1231 Species:Drosophila melanogaster
Sequence 2:XP_038958034.1 Gene:Sec24b / 295461 RGDID:1309358 Length:1294 Species:Rattus norvegicus


Alignment Length:1379 Identity:381/1379 - (27%)
Similarity:583/1379 - (42%) Gaps:302/1379 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 GAPPPNSGG-WPPQ-QQQLPQQQPPQQQLPPQQQQQQPQ-YGAPPPTSAASQPYLNGNYQQQLAT 81
            |:|.|.:|. .||: ...:....||||..|.|.|.|.|. ||.|              :|..:|.
  Rat     6 GSPHPAAGARMPPKLGGAVSGLAPPQQNGPAQSQMQVPSGYGLP--------------HQNYMAP 56

  Fly    82 SMGGLSVGGGVGGANPL-------------KPPLPQGAPAAAAPPPTGFNQFNSNAAPPPTNNNN 133
            | |..|.|.|...:.||             .|....|.|::|..|..........:||....:..
  Rat    57 S-GHYSQGPGKMTSLPLDNQCENYYSRPYTAPTQNVGTPSSANQPGAQLMYGRGPSAPHMGASMP 120

  Fly   134 AAFGAPPPTQAGSYVNGALPPSSTPQSVASGINQMSLNSATLAGLPHMPPPKAATPG-AAPGQP- 196
            ..|...|.:.:.||.:.:.|.||.....:|                  |...:||.. |:.|.| 
  Rat   121 GPFQGAPASASHSYPSASQPYSSLGNRYSS------------------PATYSATASVASQGYPS 167

  Fly   197 -----PIPAAGSTSQPPLPGQPPLPGQPPFSGQIPTSQPAPSP-------YGVPSSRPGQPQLPP 249
                 ||....:...|.: ..|.||...|: ||:.|||.||.|       |..||:....|..||
  Rat   168 TCSHYPISTVSNVVYPNV-SYPSLPASEPY-GQMFTSQSAPPPARPLKESYSGPSTAVAYPSRPP 230

  Fly   250 GATPPTYTQPGLPPQQQQGIPPLQQ------PGIPQQQPGFPPQQPGL---------PPLSQPGL 299
              .||:..|.....||||     ||      ..:|...||.||.|..|         .|.|.|.:
  Rat   231 --PPPSQHQQQQQQQQQQ-----QQQSHSGYSSLPWSGPGLPPAQDSLIRNQMGSLAIPNSHPAI 288

  Fly   300 ---------------PPQPGAPYGAPQQGGYSGGFPGQAP----GGFPGAPP-----------PL 334
                           ||:|.:.......|..|...| .||    |..|.|||           |:
  Rat   289 NVADSLSCPITENVQPPKPSSVVATVLPGPSSTRMP-PAPSHPVGPVPSAPPPPEQMQTKVRFPV 352

  Fly   335 P----------------------GQQAAAPP--------QFG----------------------- 346
            |                      |:....||        |:|                       
  Rat   353 PSHAGCGKWRPVNRDPGLWGTYIGRMRERPPEKFANKGMQYGDYVNNQASSTPTPLSSASDDEEE 417

  Fly   347 ------------------APQP-GYPGQQPG-YP---PQPGQQPMPGYPPQPGQQL--------- 379
                              :|.| .|...:.| ||   ......|:|...|:|...|         
  Rat   418 EDEDEEAGVDSSSTTSSASPLPNSYDALEGGSYPDMHSSSASSPVPDRAPEPNSTLVPTPTAAQP 482

  Fly   380 ------GGPGYPP-QP---------------GAGFPGQPGR-PGFNQPPMPGAGNMYQQAPQARR 421
                  .|.|||. ||               |..:.|.|.: ||.:|......|...|.:||...
  Rat   483 AKVAKPFGYGYPTLQPAYQNAAAPPTTAHPSGPAYSGYPQQYPGVHQLSSGLGGLSLQSSPQPES 547

  Fly   422 LDPDQMPNPIQVMIENQRLSGGPFVTNQPGLLPPLVTTKFVVHDQGNSSPRFLRSSLYCIPNTGD 486
            |      .|:.:..|...|...|.....|.|...|        .:.|.||...|.:|..||.|..
  Rat   548 L------RPVNLTQEKNILPATPIWAPVPNLSAEL--------SKLNCSPDSFRCTLTSIPQTQA 598

  Fly   487 LLKTTALPLTLNISPLAKVGEGEMEPPIVNFGEMGPIRCNRCKAYMSPNMQFVDAGRRFQCLMCK 551
            ||....|||.|.:.|...:    .:.|::....:  :||..|:.|::|.:.|:|. ||::|.:|.
  Rat   599 LLNKAKLPLGLLLHPFRDL----TQLPVITSNTI--VRCRSCRTYINPFVSFIDQ-RRWKCNLCY 656

  Fly   552 VTSEVHQNY-YQHLDHTGQRVDKHERPELLLGTYEFLATKDYCRNNTPPEVPAFIFIIDVSYNTV 615
            ..::|.:.: |..|  |....:.|:|||:...|.||:|:.||...  ||:...::|::|||:|.|
  Rat   657 RVNDVPEEFLYNPL--TRSYGEPHKRPEVQNSTVEFIASSDYMLR--PPQPAVYLFVLDVSHNAV 717

  Fly   616 KSGLVHLLCSQIKNILKHLPVDQGQDKSKVRVGFITYNSTVHFYNIKSSLAQPQMMVVGDVQEMF 680
            ::|.:.:||..:...|..||.|     |:.|:||:|::||:||||::..|:||||::|.|:.::|
  Rat   718 EAGYLTVLCQSLLENLDKLPGD-----SRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVF 777

  Fly   681 MPLLDGFLCHPEESAAVIDALMEEIPRMFADTKETETILYPAIQAGLEALKASNAAGKLLVFNST 745
            :|..|..|.:..||..:|..|:..:|.||.:|:||.:.|.||:||..:.:  |...|::.||.:.
  Rat   778 LPTPDSLLVNLYESKELIKDLLNALPNMFINTRETHSALGPALQAAFKLM--SPTGGRVSVFQTQ 840

  Fly   746 LPIAEAPGKLKNRDDRKLLGTDKEKTVLTPQTTAYNTLGQECVQQGCSVDLFVFNNAYIDLATIG 810
            ||...| |.|::|:|.....:.|....|.|.|..|..|..:|..|..:||||:.::.|.|||::.
  Rat   841 LPSLGA-GLLQSREDPNQRSSTKVVHHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLA 904

  Fly   811 QVSRLTGGEVFKYTYFQA---DVDGKRLIQDIIKNVSRPIAFDAVMRVRTSAGIRPTEFYGHFFM 872
            .:|:.:.|.:|.|..|.:   ....::|.:|:.:.::|.|.|:||||:|.:.|:....|:|:||:
  Rat   905 CMSKYSAGCIFYYPSFHSTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFHGNFFV 969

  Fly   873 SNTTDVELASIDATKSISIEIKHDDKLAPEENVYLQVALLYTSCSGQRRLRILNLALRVTTTIAD 937
            .:|..:.||:|:.....::::..::.||....|..|.||||||..|:||:|:..|.|.|.:::||
  Rat   970 RSTDLLSLANINPDAGFAVQLSIEESLADTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLAD 1034

  Fly   938 VFKCCDLDAMMLFFAKQACFKLMEHSPKQVKDNLIHRSAQILACYRKHCTS-PTSAGQLILPECL 1001
            |:...|:.|.:...|..|..:.:..|....:|.|::.....|:.|....:| |.|.  |..|..|
  Rat  1035 VYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDPLSAYSSAVSSVPRST--LTAPSSL 1097

  Fly  1002 KLLPLYASCLLKNDAISGGSDMTLDDRSYVIQFILSMDLNQSVSYLYPRFIPIHNVVPE------ 1060
            ||||||...|||..|...|:...||||.|.:..:.|..|...:..::|....|..:..|      
  Rat  1098 KLLPLYVLALLKQKAFRTGTSTRLDDRVYAMCQMKSQPLVHLMKMIHPNLYRIDRLTDEGAIHVN 1162

  Fly  1061 ETDLPTP--VRCTHEKTQEDGAYILENGVHLFVWLGQALSPDFVQSVFGVQGLQQIALERFNIVP 1123
            :..:|.|  .:.:.||...:||::::.|...::|:|:....:|:::|.|......|. ::...:|
  Rat  1163 DRVVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWIGKGCDSNFIENVLGYPDFGSIP-QKMTHLP 1226

  Fly  1124 ETPLAKRIHGILEQIMKERSRYMRITWLRQNDKLESV--------------FRHFLVEDRGTDGS 1174
            |          |:.:..||:|.. :||||.:..|..|              |:| ||||| |:.:
  Rat  1227 E----------LDTLPSERTRSF-VTWLRDSRPLSPVLHVVKDESPARTDFFQH-LVEDR-TEAA 1278

  Fly  1175 ASYVDFLCHMHKEI 1188
            .||.:||.|:.:::
  Rat  1279 LSYYEFLIHVQQQV 1292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec24CDNP_001259918.1 COG5028 395..1190 CDD:227361 254/822 (31%)
zf-Sec23_Sec24 522..559 CDD:282641 12/36 (33%)
Sec24-like 599..847 CDD:238756 86/250 (34%)
Sec23_BS 848..932 CDD:285301 31/83 (37%)
Sec23_helical 950..1043 CDD:282646 31/93 (33%)
Gelsolin 1061..1135 CDD:279020 15/75 (20%)
Sec24bXP_038958034.1 PHA03247 <2..483 CDD:223021 119/519 (23%)
COG5028 448..1285 CDD:227361 267/885 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53542
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.