DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sec24CD and sec-24.1

DIOPT Version :9

Sequence 1:NP_001259918.1 Gene:Sec24CD / 33409 FlyBaseID:FBgn0262126 Length:1231 Species:Drosophila melanogaster
Sequence 2:NP_502178.1 Gene:sec-24.1 / 178078 WormBaseID:WBGene00004755 Length:1126 Species:Caenorhabditis elegans


Alignment Length:1230 Identity:510/1230 - (41%)
Similarity:687/1230 - (55%) Gaps:149/1230 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NPNMYGPPPTQFQQQPQF---GAPPPNSGGWPPQQQQLPQQQPPQQQLPPQQQQQQPQYGAPPPT 63
            |..|.|.|..||.|||||   |.|||.:   |.:..|:|...||    |.||...|.|.|.    
 Worm     8 NGQMPGYPQQQFNQQPQFQSNGFPPPAA---PQKPAQVPGGFPP----PHQQPNGQYQNGG---- 61

  Fly    64 SAASQPYLNGNYQQQLATSMGGLSVGG-GVGGANPLKPPLPQGAPAAAAPPPTGFNQFNSNAAPP 127
                   |||| ...||.|:..:|:|. ....|.|..|..|.|.|.|   ||....|......|.
 Worm    62 -------LNGN-SSHLAQSVNNMSIGARSTPSAQPPNPYQPAGYPGA---PPQQLQQVQRQQTPQ 115

  Fly   128 PTNNNNAAFGAPPPTQAGSYVNGALPPSSTPQSVASGINQMSLNSATLAGLPHMPPPKAATPGAA 192
            .......:..||..|.||........|:.||     ||.||:..:       |:||         
 Worm   116 QFAAVPQSVQAPSATPAGPLQAMQQAPAPTP-----GIPQMNQGA-------HLPP--------- 159

  Fly   193 PGQP-----PIPAAGSTSQPPLPGQPPLPGQP-PFSGQIPTSQPAP----SPYGVPSSRPGQPQL 247
              ||     |.|.     :|.:||.|...|.| .|....||||...    .|...||:.||.||:
 Worm   160 --QPHQIHQPTPL-----RPQIPGFPQAGGSPSSFQAGAPTSQNVQGYPGGPSSAPSAYPGAPQV 217

  Fly   248 PPGATPPTYTQP---GLPPQQQQ--GIPPLQQPGIPQQQPGFP---PQQPGLPPLSQPG--LPPQ 302
            |  ..|.::..|   |.||.|..  ..||  .|.:|...|..|   ||.||:|....||  .|..
 Worm   218 P--QAPNSFIPPGTGGFPPGQPTAGSFPP--GPQVPGSYPSGPADIPQGPGMPRAFPPGASAPVA 278

  Fly   303 PGAPYGA--PQQGGYSGGFPGQAPGGFPGAPPPLPGQQAAAPPQFGAPQPGYPGQQPGYPPQPGQ 365
            ||.| ||  |.|||  .|.||..|.|.||  |..||...:..|  |||.||.||           
 Worm   279 PGMP-GAFPPGQGG--PGMPGSFPPGAPG--PGGPGMPGSFAP--GAPGPGGPG----------- 325

  Fly   366 QPMPGYPPQPGQQLGGPGYPPQPGAGFPGQPGRPGFNQPPMPGAGNMYQQAPQAR--RLDPDQMP 428
                |||.      ||||.|...| |:||.|                    ||.|  ||||:.||
 Worm   326 ----GYPS------GGPGMPGMQG-GYPGGP--------------------PQQRQQRLDPNMMP 359

  Fly   429 NPIQVMIENQRLSGGPFVTNQPGL-LPPLVTTKFVVHDQGNSSPRFLRSSLYCIPNTGDLLKTTA 492
            :.:||:.::.....|.|.|..|.. |||||:|.....||||.:|:|:||:||..|.|.|:||.:.
 Worm   360 SAVQVIDDDSSTRSGIFPTGYPNAELPPLVSTNSFAQDQGNCNPKFMRSTLYTAPQTNDILKASQ 424

  Fly   493 LPLTLNISPLAKVGEGEMEPPIVNFGEMGPIRCNRCKAYMSPNMQFVDAGRRFQCLMCKVTSEVH 557
            :||.:.|||.|.:.|.|.|||:|:.|..|||||.|||||:.|.|:|.|.||.|:|..|...:.|.
 Worm   425 IPLAVVISPFASLTEYEKEPPVVDLGPQGPIRCQRCKAYICPFMEFQDGGRSFRCPFCHARTSVE 489

  Fly   558 QNYYQHLDHTGQRVDKHERPELLLGTYEFLATKDYCRNNTPPEVPAFIFIIDVSYNTVKSGLVHL 622
            ..|:.||||||:|.|...||||.||.|:.:|||.||:|...|:.|||||:||||||.:.:|::.:
 Worm   490 DAYFAHLDHTGRRTDIEMRPELCLGAYDLVATKQYCKNGIAPKEPAFIFMIDVSYNAISNGMLPI 554

  Fly   623 LCSQIKNILKHLPVDQGQDKSKVRVGFITYNSTVHFYNIKSSLAQPQMMVVGDVQEMFMPLLDGF 687
            ||..::.:|::||.:.||.:|.:|:|..|::..|||::|.|  |.|:|:|:.||||.|:|::||.
 Worm   555 LCQNLEKVLRNLPRESGQLESSMRIGLATFDQAVHFFDISS--ASPKMLVMSDVQEPFVPMVDGL 617

  Fly   688 LCHPEESAAVIDALMEEIPRMFADTKETETILYPAIQAGLEALKASNAAGKLLVFNSTLPIAEAP 752
            |....|:...:.|.:.|||::|:.:|.|||||.|.:||||:|||.::.|||:::|::.||..:||
 Worm   618 LLPYNEALPGLRAALAEIPKLFSQSKTTETILQPVVQAGLDALKCADRAGKVILFSTVLPTYDAP 682

  Fly   753 GKLKNRDDRKLLGTDKEKTVLTPQTTAYNTLGQECVQQGCSVDLFVFNNAYIDLATIGQVSRLTG 817
            ||||:::||.||||||||..|.||..:|..||::||:.|.:||||:|.||:||:|||||:|.:||
 Worm   683 GKLKSKNDRSLLGTDKEKNALVPQEDSYTKLGEQCVKSGVTVDLFLFPNAFIDVATIGQLSAVTG 747

  Fly   818 GEVFKYTYFQADVDGKRLIQDIIKNVSRPIAFDAVMRVRTSAGIRPTEFYGHFFMSNTTDVELAS 882
            |.:||:.||.||.||.|::.::.::||:.||||.:.|||||.||||..|.|.|:|.|:||:|||:
 Worm   748 GSIFKFQYFSADKDGVRMLNELERHVSKKIAFDCMARVRTSTGIRPITFTGSFYMENSTDLELAT 812

  Fly   883 IDATKSISIEIKHDDKLAPEENVYLQVALLYTSCSGQRRLRILNLALRVTTTIADVFKCCDLDAM 947
            :|.:|:...||||||.|....: ::|.|:||||.:||||||||||.|.||.....|::..|.:|:
 Worm   813 LDESKAFITEIKHDDSLKDPAS-FIQTAVLYTSMTGQRRLRILNLCLPVTADYNQVYRLADPEAL 876

  Fly   948 MLFFAKQACFKLMEHSPKQVKDNLIHRSAQILACYRKHCTSPTSAGQLILPECLKLLPLYASCLL 1012
            ..|..|||.....:....:::::|..|.||.||.||:.|:.....|||||||.|||:|||.:.:|
 Worm   877 TAFMLKQAVQLNRDKGSSEMRESLSSRCAQFLATYREKCSEGAPLGQLILPESLKLMPLYVNSIL 941

  Fly  1013 KNDAISGGSDMTLDDRSYVIQFILSMDLNQSVSYLYPRFIPIH----NVVPEETDLPTPVRCTHE 1073
            |||||||||:||:||:.:.::.|..:.....:..:|||.:||.    |...|..|||.|||.:.|
 Worm   942 KNDAISGGSEMTVDDKVWQMELIRGLRTENVMPLIYPRVMPISDLQINDTEEMKDLPKPVRASSE 1006

  Fly  1074 KTQEDGAYILENGVHLFVWLGQALSPDFVQSVFGVQGLQQIALERFNIVPE-----TPLAKRIHG 1133
            ..:...|||::|||.||||:|.|....:||.||||....||..|. ..:||     :...:|...
 Worm  1007 FLENSKAYIIDNGVILFVWVGSACPQTWVQDVFGVGATNQIDTES-GTIPEKDNGHSRALRRAIQ 1070

  Fly  1134 ILEQIMKERSRYMRITWLRQNDKLESVFRHFLVEDRGTDGSASYVDFLCHMHKEIKDLLS 1193
            :|.:.::||..::.:    :...||...:.|||||:....:.||||:|..:|::|:||:|
 Worm  1071 LLPRGIRERKTFVVV----EKSGLEPWMKKFLVEDKAGPANMSYVDYLVDIHRKIRDLIS 1126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec24CDNP_001259918.1 COG5028 395..1190 CDD:227361 364/806 (45%)
zf-Sec23_Sec24 522..559 CDD:282641 19/36 (53%)
Sec24-like 599..847 CDD:238756 122/247 (49%)
Sec23_BS 848..932 CDD:285301 48/83 (58%)
Sec23_helical 950..1043 CDD:282646 41/92 (45%)
Gelsolin 1061..1135 CDD:279020 31/78 (40%)
sec-24.1NP_502178.1 MISS 47..267 CDD:292450 82/270 (30%)
zf-Sec23_Sec24 454..488 CDD:282641 18/33 (55%)
Sec24-like 531..777 CDD:238756 122/247 (49%)
Sec23_BS 778..861 CDD:285301 48/83 (58%)
Sec23_helical 876..971 CDD:282646 41/94 (44%)
Gelsolin 996..1069 CDD:279020 31/73 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159876
Domainoid 1 1.000 265 1.000 Domainoid score I1012
eggNOG 1 0.900 - - E1_COG5028
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3615
Inparanoid 1 1.050 836 1.000 Inparanoid score I233
Isobase 1 0.950 - 0 Normalized mean entropy S1741
OMA 1 1.010 - - QHG53542
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001889
OrthoInspector 1 1.000 - - oto18686
orthoMCL 1 0.900 - - OOG6_101536
Panther 1 1.100 - - LDO PTHR13803
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1962
SonicParanoid 1 1.000 - - X1423
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.740

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