DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sec24CD and sec24d

DIOPT Version :9

Sequence 1:NP_001259918.1 Gene:Sec24CD / 33409 FlyBaseID:FBgn0262126 Length:1231 Species:Drosophila melanogaster
Sequence 2:XP_002934294.1 Gene:sec24d / 100494048 XenbaseID:XB-GENE-977055 Length:1024 Species:Xenopus tropicalis


Alignment Length:1095 Identity:478/1095 - (43%)
Similarity:656/1095 - (59%) Gaps:104/1095 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 APPPTNNNNAAFGAPPPTQAGSYVNGALPPSSTPQSVASGINQMSLNSATLAGLPHMPPPKAATP 189
            ||||.:.:....|..||    .|                             |.|.|.||.|...
 Frog     8 APPPFSQSQPGLGGYPP----GY-----------------------------GSPMMSPPYANYG 39

  Fly   190 GAAPGQPPIP-----AAGSTSQPPL--PGQPPLPGQ--PPFSGQIPTSQPAPSPYGVPSSRPGQP 245
            |.:|..|..|     |....|||||  |...|...|  |.|||.|     .|..:|.|:......
 Frog    40 GTSPTNPTQPAMLKSAVSFGSQPPLNTPTSAPNNSQNGPNFSGNI-----MPRVHGPPAPNNTSF 99

  Fly   246 QLPPGATPPTYTQPGLPPQQQQGIPPLQQPGIPQQQPGFPPQQPGLPPLSQPGLPPQPGAPYGAP 310
            ..||...||::|...:|....|....|....|....|         |..|...:||.|..|    
 Frog   100 SYPPYGHPPSHTNSTVPTPVHQVTNQLNNMQIGNYGP---------PSSSSSQIPPGPPMP---- 151

  Fly   311 QQGGYSGGFPGQA------PGGFPGAPPPLPGQQAAAPP----QFGAPQPGYPGQQPGYPPQPGQ 365
                  ..:|||.      ||  |..||||...|...|.    |.|..|.|..|.| .:..|...
 Frog   152 ------AAYPGQTRPMPVPPG--PYFPPPLSNNQNGLPSEPFLQTGNMQEGIAGHQ-NFLSQNQA 207

  Fly   366 QPMPGYPPQPGQQLGG--PGYP-PQPGAGFPGQPGRPGFNQPPMPGAGNMYQQAPQARRLDPDQM 427
            ||..||||......||  ||.. ..||| |||       |||.|.|        |..|:.|||.:
 Frog   208 QPQIGYPPPNSNNYGGQLPGSTLSYPGA-FPG-------NQPQMSG--------PPQRKTDPDSI 256

  Fly   428 PNPIQVMIENQRL--SGGPFVTNQPGLLPPLVTTKFVVHDQGNSSPRFLRSSLYCIPNTGDLLKT 490
            |:|||| |::.::  :|..:.||..|.:||||||:..:.||||:|||::|.:.||.|.:.|:.|.
 Frog   257 PSPIQV-IDSDKINRAGQVYTTNVRGQVPPLVTTECTIQDQGNASPRYIRCTTYCFPTSSDMAKQ 320

  Fly   491 TALPLTLNISPLAKVGEGEMEPPIVNFGEMGPIRCNRCKAYMSPNMQFVDAGRRFQCLMCKVTSE 555
            :.:||.:.|.|||.|.:.|....|||.||.||||||||||||.|.|||::.|||:.|..|...::
 Frog   321 SQIPLAVVIKPLAVVPKNETPIYIVNHGETGPIRCNRCKAYMCPFMQFIEGGRRYHCGFCSCVND 385

  Fly   556 VHQNYYQHLDHTGQRVDKHERPELLLGTYEFLATKDYCRNNTPPEVPAFIFIIDVSYNTVKSGLV 620
            |...|:|||||.|:|||..|||||.||:||::||.||||.|.||..||:||:||||||.:|:|:|
 Frog   386 VPPFYFQHLDHIGRRVDHFERPELSLGSYEYVATLDYCRKNKPPNPPAYIFMIDVSYNNIKNGVV 450

  Fly   621 HLLCSQIKNILKHLPVDQGQDKSKVRVGFITYNSTVHFYNIKSSLAQPQMMVVGDVQEMFMPLLD 685
            .|:|.::|.:|::||.::..:.|.:||||:|||..:||||:.|:|||||||||.|..|:|:||||
 Frog   451 RLICEELKILLENLPREENAESSAIRVGFVTYNKVLHFYNVNSNLAQPQMMVVTDTAEVFLPLLD 515

  Fly   686 GFLCHPEESAAVIDALMEEIPRMFADTKETETILYPAIQAGLEALKASNAAGKLLVFNSTLPIAE 750
            |||.:..||.:||:.|:.:||.|||||.|:||:..|.||||:||||||...|||.:|.|:||.||
 Frog   516 GFLVNFNESKSVINNLLSQIPEMFADTNESETVFAPIIQAGMEALKASECVGKLFIFQSSLPTAE 580

  Fly   751 APGKLKNRDDRKLLGTDKEKTVLTPQTTAYNTLGQECVQQGCSVDLFVFNNAYIDLATIGQVSRL 815
            |||||:|||||||:.|:|||.:..||:..|..|.:|||..||.||||:|.|.:||:|::|.|:..
 Frog   581 APGKLRNRDDRKLVNTEKEKILFMPQSNVYENLAKECVANGCCVDLFLFPNQHIDVASMGIVTMQ 645

  Fly   816 TGGEVFKYTYFQADVDGKRLIQDIIKNVSRPIAFDAVMRVRTSAGIRPTEFYGHFFMSNTTDVEL 880
            |||.::||:.||...||::.|.|:.|::.:.:.|||:||||||.|.|.|:|:|..:||||:|||:
 Frog   646 TGGTLYKYSQFQVHTDGQQFISDLRKDIEKHVGFDAIMRVRTSTGFRATDFFGGIYMSNTSDVEM 710

  Fly   881 ASIDATKSISIEIKHDDKLAPEENVYLQVALLYTSCSGQRRLRILNLALRVTTTIADVFKCCDLD 945
            |.:|..|::::|.||||||:.:....:|.||||||.||||||.|.|::|..::.:||::|.|:.|
 Frog   711 AGVDCDKAVTVEFKHDDKLSEDTGALIQCALLYTSISGQRRLLIHNISLNCSSQMADIYKSCETD 775

  Fly   946 AMMLFFAKQACFKLMEHSP-KQVKDNLIHRSAQILACYRKHCTSPTSAGQLILPECLKLLPLYAS 1009
            .::.||||.| :|.|.|.| |.|:|.||.::|.:||||||:|.||::..|||||:.:||||:|.:
 Frog   776 VLINFFAKSA-YKAMLHHPLKTVRDVLISQTAHMLACYRKNCASPSAVSQLILPDSMKLLPVYMN 839

  Fly  1010 CLLKNDAISGGSDMTLDDRSYVIQFILSMDLNQSVSYLYPRFIPIHNVVPEETDLPTPVRCTHEK 1074
            |||||:.:.|..::..|:|::..|.::.||:..|..:.||:.:|||.:..::..:||||||:.|:
 Frog   840 CLLKNEVLIGSPEVPTDERTFQRQLVMCMDVASSQIFFYPQLLPIHTMDLKDDTIPTPVRCSEER 904

  Fly  1075 TQEDGAYILENGVHLFVWLGQALSPDFVQSVFGVQGLQQIALERFNI-VPETPLAKRIHGILEQI 1138
            ..|.|.::|.||:::|:|||....|:|:|.:|.|.....|..|..:: ..::..:|::..|::.|
 Frog   905 LSEGGIFLLANGINMFLWLGFNSPPEFIQGIFNVPSFAHITPEATSLPAVDSAHSKKLRSIMDAI 969

  Fly  1139 MKERSRYMRITWLRQNDKLESVFRHFLVEDRGTDGSASYVDFLCHMHKEIKDLLS 1193
            .|.....|::..::|.||.|..||..||||:|..|.|||:||||.:||||:.||:
 Frog   970 QKTCPYSMKLILVKQKDKAEMGFRQMLVEDKGLLGGASYMDFLCCVHKEIRQLLT 1024

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec24CDNP_001259918.1 COG5028 395..1190 CDD:227361 390/798 (49%)
zf-Sec23_Sec24 522..559 CDD:282641 21/36 (58%)
Sec24-like 599..847 CDD:238756 135/247 (55%)
Sec23_BS 848..932 CDD:285301 47/83 (57%)
Sec23_helical 950..1043 CDD:282646 45/93 (48%)
Gelsolin 1061..1135 CDD:279020 24/74 (32%)
sec24dXP_002934294.1 Med15 <35..>258 CDD:312941 83/265 (31%)
COG5028 157..1020 CDD:227361 422/883 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 317 1.000 Domainoid score I1262
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 970 1.000 Inparanoid score I322
OMA 1 1.010 - - QHG53542
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001889
OrthoInspector 1 1.000 - - otm48025
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1423
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.970

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