DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4270 and vap-2

DIOPT Version :9

Sequence 1:NP_608663.1 Gene:CG4270 / 33408 FlyBaseID:FBgn0031407 Length:170 Species:Drosophila melanogaster
Sequence 2:NP_001300377.1 Gene:vap-2 / 181273 WormBaseID:WBGene00011462 Length:507 Species:Caenorhabditis elegans


Alignment Length:122 Identity:34/122 - (27%)
Similarity:55/122 - (45%) Gaps:30/122 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 LNKLAQEWANHLRDQNTMAHRPNPKYGENIFLSGGMDVTGDLP-------VEMWYREINSYDF-- 112
            |.:.||.|||:....:: ||...|..|:|:::|   ..:...|       ||.|::|:..:..  
 Worm   359 LERFAQNWANNCVFAHS-AHYERPNQGQNLYMS---SFSNPDPRSLIHTAVEKWWQELEEFGTPI 419

  Fly   113 ------------NKAQFVPTAGHFTQLIWKSSVEMGSGVARKADRTWVVCNYNPPGN 157
                        .||     .||:||:.|..:..:|.|:|.....::|||:|.|.||
 Worm   420 DNVLTPELWDLKGKA-----IGHYTQMAWDRTYRLGCGIANCPKMSYVVCHYGPAGN 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4270NP_608663.1 SCP_GAPR-1_like 31..158 CDD:240182 34/122 (28%)
vap-2NP_001300377.1 SCP 104..253 CDD:214553
SCP 315..468 CDD:214553 31/117 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2340
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X35
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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