DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Send1 and Tpsg1

DIOPT Version :10

Sequence 1:NP_608662.1 Gene:Send1 / 33407 FlyBaseID:FBgn0031406 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_001426649.1 Gene:Tpsg1 / 302990 RGDID:631355 Length:320 Species:Rattus norvegicus


Alignment Length:271 Identity:78/271 - (28%)
Similarity:114/271 - (42%) Gaps:50/271 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FHLLLAVHLLISPVV------PVLLEPSERIIGGSSMDITDVPWQVSLQYYGEHFCGGSIYSKTI 64
            |.|||||..:....:      |.:.....||:||.:......|||.||:....|.||||:.|...
  Rat     9 FLLLLAVPGISCEALQSGCGQPQVSHAGSRIVGGHAAQAGAWPWQASLRLQKVHVCGGSLLSPEW 73

  Fly    65 IITAAHCIKEGERSIRAGSSLHDSGGVVVGVEAYIIHPQFD-------------KHNMENDVAVL 116
            ::|||||.        :||.......|.:|.....:.|.|.             ......|:|::
  Rat    74 VLTAAHCF--------SGSVNSSDYEVHLGELTITLSPHFSTVKQIIMYSSAPGPPGSSGDIALV 130

  Fly   117 KLSSPLSFSDSIQTI--PLAETDPPTSSSALATGWG---RGNFLIRPRQLQGVEILIRPLIVCKL 176
            :|::|::.|..:|.:  |.|..|.........||||   .|..|..|..||..::.:..:..|..
  Rat   131 QLATPVALSSQVQPVCLPEASADFHPGMQCWVTGWGYTQEGEPLKPPYNLQEAKVSVVDVETCSQ 195

  Fly   177 KY----GNGVFNEDICAGRMGKG-GCYGDSGGPLVFNGQLVGITSRTGNIVCLGS--------SL 228
            .|    |:.:.::.:||  .|.| .|..|||||||.  ::.||..:.| :|..|.        .:
  Rat   196 AYSSSNGSLIQSDMLCA--WGPGDACQDDSGGPLVC--RVAGIWQQAG-VVSWGEGCGRPDRPGV 255

  Fly   229 YASVARYRNWI 239
            ||.|..|.|||
  Rat   256 YARVTAYVNWI 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Send1NP_608662.1 Tryp_SPc 29..239 CDD:214473 69/240 (29%)
Tpsg1NP_001426649.1 None

Return to query results.
Submit another query.