DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Send1 and LOC102554637

DIOPT Version :9

Sequence 1:NP_608662.1 Gene:Send1 / 33407 FlyBaseID:FBgn0031406 Length:255 Species:Drosophila melanogaster
Sequence 2:XP_017448472.2 Gene:LOC102554637 / 102554637 RGDID:7618053 Length:246 Species:Rattus norvegicus


Alignment Length:253 Identity:84/253 - (33%)
Similarity:128/253 - (50%) Gaps:28/253 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LAVHLLISPVVPVLLEPSERIIGGSSMDITDVPWQVSLQYYGEHFCGGSIYSKTIIITAAHCIKE 74
            |.|.:|:...|...::..::|:||.:.....||:||||. .|.|:||||:.:...:::||||.|.
  Rat     4 LLVLVLVGAAVAFPVDDDDKIVGGYTCQEHSVPYQVSLN-SGYHYCGGSLINDQWVVSAAHCYKS 67

  Fly    75 ------GERSIRAGSSLHDSGGVVVGVEAY------IIHPQFDKHNMENDVAVLKLSSPLSFSDS 127
                  ||.:|          .|:.|.|.:      |.||.||:..:.||:.::|||||:..:..
  Rat    68 RIQVRLGEHNI----------NVLEGDEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAR 122

  Fly   128 IQTIPLAETDPPTSSSALATGWGRG-NFLIR-PRQLQGVEILIRPLIVCKLKYGNGVFNEDICAG 190
            :.|:.|..:..|..:..|.:|||.. :|.:. |..||.::..:.|...|:..|...:.|..:|||
  Rat   123 VATVALPSSCAPAGTQCLISGWGNTLSFGVNDPDLLQCLDAPLLPQADCEASYPGKITNNMVCAG 187

  Fly   191 RM--GKGGCYGDSGGPLVFNGQLVGITS-RTGNIVCLGSSLYASVARYRNWILSAIDV 245
            .:  ||..|.||||||:|.||:|.||.| ..|..:.....:|..|..|.:||...|.|
  Rat   188 FLEGGKDSCQGDSGGPVVCNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAV 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Send1NP_608662.1 Tryp_SPc 29..239 CDD:214473 76/226 (34%)
Tryp_SPc 30..239 CDD:238113 76/225 (34%)
LOC102554637XP_017448472.2 Tryp_SPc 24..242 CDD:238113 78/228 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D469244at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.