DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser12 and Tmprss2

DIOPT Version :10

Sequence 1:NP_523456.1 Gene:Ser12 / 33406 FlyBaseID:FBgn0011832 Length:245 Species:Drosophila melanogaster
Sequence 2:XP_008766769.1 Gene:Tmprss2 / 156435 RGDID:620766 Length:580 Species:Rattus norvegicus


Alignment Length:265 Identity:95/265 - (35%)
Similarity:128/265 - (48%) Gaps:50/265 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LVASVTLISAG----SSPERIVGGHPVLISEVPWQAALMYSEKYICGAVIYSDKIIITAAHCVER 68
            :|.|:..|..|    ....|||||......:.|||.:|.....::||..|.:.:.|:|||||||.
  Rat   234 MVVSLRCIECGVRSVRRQSRIVGGSTASPGDWPWQVSLHVQGIHVCGGSIITPEWIVTAAHCVEE 298

  Fly    69 PFDT--LYSVRVGSVWKNL---GGQHARVAVIRKHEDYVSSTILFNDIAVIRLVDTLIFNAEVRP 128
            |..:  .::...|.:.::|   |.:| :|..:..|.:|.|.| ..||||:::|...|.||..|:|
  Rat   299 PLSSPRYWTAFAGILKQSLMFYGSRH-QVEKVISHPNYDSKT-KNNDIALMKLQTPLAFNDVVKP 361

  Fly   129 IQLADSAPAAG------TEASVSGWG---EIGILWLQPTSLLKTS-------VKILDPNVCKRSY 177
            :.|    |..|      .|..:||||   |.|          |||       |.:::|:.|...|
  Rat   362 VCL----PNPGMMLDLAQECWISGWGATYEKG----------KTSDVLNAAMVPLIEPSKCNSKY 412

  Fly   178 QY---ITKTMICAAAL--LKDSCHGDSGGPLVSGGQ----LVGIVSYGIGCANPFFPGVYANVAE 233
            .|   ||..||||..|  ..|||.||||||||:...    |:|..|:|.|||..:.||||.||..
  Rat   413 IYNNLITPAMICAGFLQGSVDSCQGDSGGPLVTLKNEIWWLIGDTSWGSGCAKAYRPGVYGNVTV 477

  Fly   234 LKPWI 238
            ...||
  Rat   478 FTDWI 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ser12NP_523456.1 Tryp_SPc 23..238 CDD:214473 89/244 (36%)
Tmprss2XP_008766769.1 LDLa 112..147 CDD:238060
SRCR_2 152..247 CDD:464747 4/12 (33%)
Tryp_SPc 254..485 CDD:238113 90/245 (37%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.