DRSC/TRiP Functional Genomics Resources

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Protein Alignment papi and PCBP2

DIOPT Version :10

Sequence 1:NP_608657.1 Gene:papi / 33401 FlyBaseID:FBgn0031401 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_005007.2 Gene:PCBP2 / 5094 HGNCID:8648 Length:366 Species:Homo sapiens


Alignment Length:178 Identity:45/178 - (25%)
Similarity:67/178 - (37%) Gaps:46/178 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 RNARRTV-SVFVCVAANMYAGLGSDAGTDVDDEIARQ---RQTFEQRRRELEESTLLTSQ--RCL 85
            |.||||| ||.|.                ||.::|..   ...|..:...:..|.|:..|  .|.
Human   518 REARRTVTSVSVL----------------VDHQLAPSFYFVAYFYHQGHPVANSLLINIQPRDCE 566

  Fly    86 GVLRETEQVGIATAEELHR---QREQLEKTKK---QLDEINNSL----RFSQKHLNSLKSVFGGL 140
            |.|    |:.:..|:|.|.   .:.|::...|   .|..::.:|    .:|.|.|: :..||..:
Human   567 GKL----QLKVVGAKEYHNGDMMKLQIQTDSKALVALGAVDTALYAVGGWSHKPLD-MSKVFEVI 626

  Fly   141 KNYLSGRMVASGGGGGGGSGGP---IGPGSVVHHGDGGGIPRQNISSP 185
            .:|      ..|.|.|||...|   ...|.....||.....|:::|.|
Human   627 DSY------NLGCGPGGGDDAPQVFQDAGLAFSDGDRLTQTREDLSCP 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
papiNP_608657.1 KH_1 68..129 CDD:459630 15/72 (21%)
KH-I 140..209 CDD:469614 13/49 (27%)
Tudor_TDRD2 281..383 CDD:410483
PCBP2NP_005007.2 KH-I_PCBP1_2_rpt1 13..82 CDD:411943
KH-I_PCBP1_2_rpt2 92..169 CDD:411946
KH-I_PCBP1_2_rpt3 285..360 CDD:411949
Blue background indicates that the domain is not in the aligned region.

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