DRSC/TRiP Functional Genomics Resources

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Protein Alignment papi and Tdrd1

DIOPT Version :10

Sequence 1:NP_608657.1 Gene:papi / 33401 FlyBaseID:FBgn0031401 Length:576 Species:Drosophila melanogaster
Sequence 2:XP_038959137.1 Gene:Tdrd1 / 292129 RGDID:1306140 Length:1174 Species:Rattus norvegicus


Alignment Length:386 Identity:91/386 - (23%)
Similarity:150/386 - (38%) Gaps:112/386 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 SIASSMYSSQTSLSSHTQPRDK-LMASKG------------EG---------------KPMEVYV 265
            |:|..:.:|:..|.|.....:| ::|.||            ||               :.::|.|
  Rat   651 SVAPHLSASKALLDSGFAIEEKDIVADKGSSARASNVPLAVEGAVEVLEWTWVEFTVDETVDVMV 715

  Fly   266 SAVASPTKFWVQLIGPQS-KKLDSMVQEMTSYYS-------SAENRAKHVLTAPYVGQIVAAVFK 322
            ..:.||.:|:...:...: ||||.:.:.:..|.:       .||           ||:...|.|.
  Rat   716 CMMHSPGEFYCHCLKDDALKKLDDLNKSLADYCAQKPPNGFKAE-----------VGRPCCACFA 769

  Fly   323 FDEKWYRAEIVDIMPNQYNPKEQVIDLYFVDYGDSEYISPADICELRTDFLTLRFQAVECFLANV 387
            .|..||||.:.:|:|:..      :.::|||||:.|.::...:..:...||.|.||.::|:|.: 
  Rat   770 GDGNWYRALVKEILPSGN------VKVHFVDYGNVEEVTTDQLHAIAPQFLLLPFQGMQCWLVD- 827

  Fly   388 KSTIQTEPITWPKSSIAKFEELTEVAHWRKLIARVVTYKERPRATTAVSAAAKEGTPLPGVELFD 452
               ||.:...|.|.:.|:|:....   ..||.||||...|             .|.   ||||.|
  Rat   828 ---IQPKNKHWTKEATARFQACVV---GLKLQARVVEITE-------------NGV---GVELTD 870

  Fly   453 PADNSELNIADLMITQGFAL-------------PLDDSYPVRSRS--STPSSNSDSTIEELCVSN 502
            .:......|:|::||:...|             |.:....:.|:|  ::|.:....|||     .
  Rat   871 LSTPYPKIISDVLITEHLVLRCGSPQKDELMSRPANKHNQIDSQSVQASPPAEQWKTIE-----L 930

  Fly   503 PVTPLTPHSPMSMSIDVDSITQAENEHLAQQLQHLQHKLNGNDIKNINPAKLTATDLENGN 563
            ||....|.:.:.:      |:......:..::...|.||          ..|||..||:.|
  Rat   931 PVNKTVPANVLEI------ISPTLFYAIPSEMPENQEKL----------CVLTAELLEHCN 975

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
papiNP_608657.1 KH_1 68..129 CDD:459630
KH-I 140..209 CDD:469614
Tudor_TDRD2 281..383 CDD:410483 29/109 (27%)
Tdrd1XP_038959137.1 zf-MYND 162..198 CDD:460312
Tudor_TDRD1_rpt1 262..391 CDD:410479
Tudor_TDRD1_rpt2 512..593 CDD:410480
TUDOR 709..825 CDD:425754 35/132 (27%)
Tudor_SF 938..1053 CDD:470623 10/54 (19%)
Blue background indicates that the domain is not in the aligned region.

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