DRSC/TRiP Functional Genomics Resources

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Protein Alignment papi and tdrd1

DIOPT Version :10

Sequence 1:NP_608657.1 Gene:papi / 33401 FlyBaseID:FBgn0031401 Length:576 Species:Drosophila melanogaster
Sequence 2:XP_004919429.1 Gene:tdrd1 / 100216261 XenbaseID:XB-GENE-6455203 Length:1165 Species:Xenopus tropicalis


Alignment Length:340 Identity:81/340 - (23%)
Similarity:145/340 - (42%) Gaps:57/340 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 PRRSPTNSIASSMYSSQTSLSSHTQPRDKLMASKGEGKPMEVYVSAVASPTKFWVQLIGPQSKKL 286
            |||...:.:.:|..:.:  |.......|...:...|||..:.:|....||:||.:|:.  .:|.|
 Frog   162 PRRGEASPVGNSPKTEE--LVKKIMFSDLQESGLREGKESQGFVLDFLSPSKFNIQVC--NTKSL 222

  Fly   287 DSMVQEMT---SYYSSAENRAKHVLTAPYVGQIVAAVFKFDEKWYRAEIVDIMPNQYNPKEQVID 348
            ||:|:..|   ..|:..||..|..  .|.:|::..|.:..|:.|||     :|.:..:.:.::..
 Frog   223 DSLVKVSTLLKEIYTKPENLKKGY--TPAIGEVCVARYAQDQNWYR-----VMVHSLDAQMKMAQ 280

  Fly   349 LYFVDYGDSEYISPADICELRTDFLTLRFQAVECFLANVKSTIQTEPITWPKSSIAKFEELTEVA 413
            :.::|||::|.:|..|:.::..|.......|::|||||    |...|..|....:....:|    
 Frog   281 VLYLDYGNTEAVSIDDVQQMHKDVELFPPSAIKCFLAN----IAAPPCGWTPECLVDVRKL---- 337

  Fly   414 HWRKLIARVVTYKERPRATTAVSAAAKEGTPLPGVELFDPADNSELNIADLMITQGFALPLDDSY 478
                |:.:.||:        .|....:|..|:.||::..|:...  .:...::.:|:..    |.
 Frog   338 ----LLGKKVTF--------TVLRIEQEEPPIYGVDVTLPSSGD--RVGKYLLDKGYCF----SP 384

  Fly   479 PVRSRSSTPSSNSDSTIEELCVSNPVTPLTPHSPMSMSIDVDS-------IT--QAENEHLAQQL 534
            .|:|:....||.:||.:::  .:||....|...|....:.|.:       ||  |..:....|||
 Frog   385 EVKSKMKRCSSETDSILDK--AANPEETSTELPPTLKVVSVSAGDIFNAVITDIQTPSRFFCQQL 447

  Fly   535 QHLQHKLNGNDIKNI 549
            |      ||..:..:
 Frog   448 Q------NGQQLAEL 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
papiNP_608657.1 KH_1 68..129 CDD:459630
KH-I 140..209 CDD:469614
Tudor_TDRD2 281..383 CDD:410483 26/104 (25%)
tdrd1XP_004919429.1 zf-MYND 103..139 CDD:460312
Tudor_TDRD1_rpt1 201..331 CDD:410479 40/142 (28%)
Tudor_TDRD1_rpt2 450..531 CDD:410480 1/7 (14%)
TUDOR 653..767 CDD:425754
Tudor_TDRD1_rpt4 939..1054 CDD:410482
Blue background indicates that the domain is not in the aligned region.

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