DRSC/TRiP Functional Genomics Resources

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Protein Alignment mio and F39C12.1

DIOPT Version :9

Sequence 1:NP_608656.1 Gene:mio / 33399 FlyBaseID:FBgn0031399 Length:867 Species:Drosophila melanogaster
Sequence 2:NP_001360031.1 Gene:F39C12.1 / 180759 WormBaseID:WBGene00018193 Length:5115 Species:Caenorhabditis elegans


Alignment Length:815 Identity:162/815 - (19%)
Similarity:277/815 - (33%) Gaps:248/815 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 GMSQKMIKLFDLRQSNATCQSIQTKTVQGLSVSPNGNYLCSYVDSVITLWDPRNIKSPLRQIQSS 233
            |.::|.:   .:.||....|.:.||      :......|..|:|          :.:|::.:.||
 Worm  4377 GTAEKKV---IVEQSKFNFQKLNTK------LQTFFECLDEYID----------VGTPIKLVFSS 4422

  Fly   234 KNHLQIAWCPTRTSLLSSLQRDSSYITLYDIRSVDTDNSGEIYHVKRQISPFPARYQHSGKFSFV 298
            ||.:    .|.:               ::|:::...|   .:|:.    ||.|.  .....||..
 Worm  4423 KNTI----LPKK---------------MFDVKTKLID---PVYYT----SPSPC--NTDSDFSDN 4459

  Fly   299 NCLSWHSRDFERALLLADALNILDFR-LPATLHTAHSNRRKLPLLMQR--PLYTPASPTSTAA-- 358
            ....:.|.|.::..|.....:....: ||..::.|...:.::...::|  |...|...|....  
 Worm  4460 TPDDYKSSDLKQFFLRESLESTYHVKGLPGLIYLARLVQERVADDVERNIPFRGPGMETCNLVVY 4524

  Fly   359 -TPTQQQPTSSCSTNSGSSLDFSTPGGSPFNVDLLK--PELFEL--------------DL----V 402
             ||.::...:|........||         :|.|.|  .|.|||              ||    :
 Worm  4525 MTPIRRLMLNSFGLRMPDRLD---------DVMLSKHQNEKFELWFDRLYRMLCYGRGDLCKYII 4580

  Fly   403 DETRQRALEDYGIKPDNKRFGELHLTPYLRNVWSTL--NNVYSEDRLTGLKATL--------GIN 457
            |:.      ..|..|.||::.::.:| |..::...|  ..:|.|:   |.:|.|        |::
 Worm  4581 DKI------SLGQGPPNKKYEKMDIT-YQAHIIHKLYKKMMYIEN---GREAKLAVQEFMDIGLD 4635

  Fly   458 LGH---TSEALMASSRIESQVLQWPEGINNSN------KLICYRSEQRDLALQ------------ 501
            :.|   :.:..|  .:.:..:...|:..|..|      :.:.|.:.:.|:.:.            
 Worm  4636 IDHEPFSKQVKM--GQYDRMLYGNPKPWNKDNWVEACDQFLNYSNTKEDVLVSCQASLLLMRMIF 4698

  Fly   502 LCGWAFEQELDRFIDQLYANKEYSRAAMICVFHL-----------KIFHACNILSSA-------- 547
            |.|  :.|::   :|.|.......|..::.:.:|           ||||....|...        
 Worm  4699 LGG--YSQDV---VDHLITMNLPMRDKLLFIINLTPPDNLVENIVKIFHTVRGLDRLPFVGLGYH 4758

  Fly   548 ADNMR----------DPSMYRITVIALSSFNADR---------CSSTWRNQRSSANMQ---IHDP 590
            ||.:|          ||.:  |..|.......||         |.|....:|..||:.   |.:.
 Worm  4759 ADPLRVLFEEAVESGDPQL--IAHIVRVGRCLDRRSREPMMTDCGSDHIQKRDFANIMTKVITNG 4821

  Fly   591 HLRAVFSFLTM-EKDNFDAVLKEEGVSLSDRMAFACKYLSETKLADYVA---QQIQAAIDGGDLN 651
            :.|..:...|| |...|..|...:|..:::....... :.|.::..|:|   ....||:..|||:
 Worm  4822 NERRPYGAPTMDEMFPFRYVRNPDGSDVAETTEELAN-IMECEVTRYMAILELTKGAAVTKGDLD 4885

  Fly   652 --------------GLLLTG---ESQDGIDILQSYMDTSFDVQTVALVAINYFRQELFEDKRIQY 699
                          .:|.||   ....|.::  ..:..:..|.|:.|:.         :||..:.
 Worm  4886 HNPKFNTYPHKFYFDVLCTGCKMNVSKGRNL--GRLGRTLCVSTMPLIE---------QDKDKKR 4939

  Fly   700 WIASYLDHLNSWGLWEKRAELDIKIESIRPSSRSSRTVFLSCNFCGKSVSNALLDEPRPRSTTTS 764
            |        .:......|...:..||::.|:.             .|.:....::|.:...|...
 Worm  4940 W--------PNAKTMSPRLTFENYIETLDPTE-------------NKMLMAKDIEEEKTDITVQV 4983

  Fly   765 TNRLSSCPSCRKPLPRCSLCLM-----HMGTMVNMSNGETPTTTPDVPGWQTKPFSKWFSWCQTC 824
            ......|..||..||||.:|:.     ||...:...|               :.||: ||.|..|
 Worm  4984 LPSRFGCFQCRFSLPRCCVCMCPYLNDHMDFALKDYN---------------ESFSQ-FSICNIC 5032

  Fly   825 RHGGHTEHIMQWFKQNSECPVSSCNCRCFDMDGTK 859
            .||||..||..||:....|||:.|:|||.....||
 Worm  5033 NHGGHVNHIATWFETEKYCPVAGCDCRCQRSKQTK 5067

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mioNP_608656.1 WD40 repeat 8..44 CDD:293791
WD40 60..>266 CDD:295369 17/96 (18%)
WD40 repeat 60..101 CDD:293791
WD40 <65..266 CDD:225201 17/96 (18%)
WD40 repeat 105..148 CDD:293791
WD40 repeat 155..188 CDD:293791 4/18 (22%)
WD40 repeat 195..231 CDD:293791 4/35 (11%)
WD40 repeat 236..284 CDD:293791 4/47 (9%)
Zn_ribbon_17 741..852 CDD:305234 33/115 (29%)
F39C12.1NP_001360031.1 DedD 2883..>2991 CDD:225689
PTZ00449 <3020..3470 CDD:185628
mRING-H2-C3H3C2_Mio 4997..5060 CDD:319605 27/78 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158443
Domainoid 1 1.000 62 1.000 Domainoid score I6870
eggNOG 1 0.900 - - E1_KOG1008
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005795
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR16453
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1695
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.920

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