DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment aop and Elf1

DIOPT Version :9

Sequence 1:NP_001259908.1 Gene:aop / 33392 FlyBaseID:FBgn0000097 Length:732 Species:Drosophila melanogaster
Sequence 2:XP_006252409.1 Gene:Elf1 / 85424 RGDID:620697 Length:623 Species:Rattus norvegicus


Alignment Length:554 Identity:127/554 - (22%)
Similarity:207/554 - (37%) Gaps:184/554 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 APLSYSTASPPGTPILKDIKPNWTQQLTNSFVNS-WSQQQQQQQQQQAAAVAAVAAQAQQHQLQQ 340
            ||:::.:.:..|.|.:.:     |||:..|..:| .:...:|.::::.|::..         |.:
  Rat   134 APITHVSVTLDGIPEVME-----TQQVQESNADSPGASSPEQPKRKKGASLTC---------LGR 184

  Fly   341 QQQQQQLPQKLTLDNTAGPVVTPAGGSISAPTTPSYMYKAKREFFPENSEPNTNGRLLWDFLQQL 405
            ::.:...|.            :||       |||:...|.|      :.:...|...||:||..|
  Rat   185 RKTKPPRPD------------SPA-------TTPNISVKKK------SKDGKGNTIYLWEFLLAL 224

  Fly   406 LNDRN--QKYSDLIAWKCRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRALRYYYRVNILRK 468
            |.|:.  .||   |.|..|:.|:||:||...:::|||..||...|||:.|.|||||||:..||.|
  Rat   225 LQDKATCPKY---IKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRALRYYYQRGILAK 286

  Fly   469 VQGERHCYQFLRNPTELKNI-------------KNISLLRQSTPANGN----GGSPSMPQGSSQ- 515
            |:|:|..|||...|.:|..|             :::|....|:....|    ..||.:..|::. 
  Rat   287 VEGQRLVYQFKEMPKDLIYIDDEGPSSSTESSDQSLSSTTTSSRNQANRTRMSSSPGIKGGATTI 351

  Fly   516 -APGSP----------AGQNWNPQQ--QSQQQQQSPQ-----------RPASRNGPMSLPAVAAV 556
             .||:|          .||   |.:  ::.|..|:|.           :|.     .::|..|.:
  Rat   352 LKPGNPKVAKPKDTVEVGQ---PSEVLRTVQPSQAPYPTQLFRTVHVVQPV-----QAIPEEATI 408

  Fly   557 A------AAAAAAYG----------PPPTSP--LFMHAINGAFHYLSAAAAGPPPNSPA------ 597
            .      ||.::..|          |...||  ..:|.:......|:...|...|:|.|      
  Rat   409 TSTMQEEAAGSSVQGIRTIQASTQVPVVVSPGNQQLHTVTLQTVPLTTVIASTDPSSGAGPQKFI 473

  Fly   598 -----LNTPSAV------------GGPDKFQFHPLKLE---NGS----GSGSESAGEDLKPTDLS 638
                 .:.|..|            |.|....|.|..::   .||    |:|:.|..   .|.:.|
  Rat   474 LQAIPSSQPMTVLKENVLLQSQKPGSPPSIVFSPTPVQQVLTGSVQSLGNGAVSMA---SPPNFS 535

  Fly   639 VSSKSTATSNEDCYPLIRNADGLTTIKLIRYNEHQVAASPAG------------QSPKHDDQQAG 691
            .::.....|...                      |:||.|.|            ::||.:.::..
  Rat   536 ATAPVVTFSRSS----------------------QLAAHPPGTVITSVIKAQETKTPKAEVEKKA 578

  Fly   692 ASNASSSPRPMDQASEQAQP-VPMESDCNGGESE 724
            ..:.:..|..::|   |.|| |.:.|..||..|:
  Rat   579 EGHLNGDPEEIEQ---QPQPYVMVVSSSNGFSSQ 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aopNP_001259908.1 SAM_PNT-Tel_Yan 49..116 CDD:176085
ETS 395..482 CDD:197710 42/88 (48%)
Elf1XP_006252409.1 Elf-1_N 2..111 CDD:403506
ETS 214..296 CDD:197710 40/84 (48%)
rne <359..539 CDD:236766 34/190 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3804
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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