DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TBCD and tbcd-1

DIOPT Version :9

Sequence 1:NP_608648.1 Gene:TBCD / 33389 FlyBaseID:FBgn0027509 Length:1189 Species:Drosophila melanogaster
Sequence 2:NP_001369974.1 Gene:tbcd-1 / 172622 WormBaseID:WBGene00008887 Length:1163 Species:Caenorhabditis elegans


Alignment Length:1228 Identity:357/1228 - (29%)
Similarity:560/1228 - (45%) Gaps:175/1228 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 DEDLP--------------ANTLEHFTELQQVLEMIDNIKSIAANTFEREFE----QYAQVLSRY 56
            |||.|              |..:.|..|::::::.:..|..:.....|...|    :|:::|..|
 Worm     2 DEDAPVDESNEGIIGCLPSAVNIHHIEEIKELVDQLPIIFKLENECDETAAEVNYLRYSRLLHLY 66

  Fly    57 QEQPHLLDPHLEELLGKLLH-------KIRKPDLDTGELHAAFKYLYIICKVRTYKVLVKFMPHE 114
            ||||.|||..:.|::..|:.       .:.||...|.....:.|||..:|.||..|.:|:.:||:
 Worm    67 QEQPRLLDKWIPEIVANLVDLVTLIGIDVSKPRAMTPLSRESLKYLSDLCIVRGSKTIVRLLPHQ 131

  Fly   115 LSDLEFVLDLLGQQNPKEFEQWETRYILLLWMSILVLNPFHMSRLDAYDTSTSAPTTNCSPVNHV 179
            :..|:.:|..|......:......|.:||:|:.|:|.|||.:.|.|        ||.:  |.|.:
 Worm   132 VHLLDPLLQTLEYYETSQLSDHNQRNVLLMWLWIVVKNPFDLRRFD--------PTGD--PDNVI 186

  Fly   180 QSKNTKMDRIFELIQLYVSSN-DTCSSMAAFLAAKYFIRSD--IKDL-YLERFLDWIMEQHQADT 240
                   .||..:...|:..: ::..:.||.:.|....|:|  .|.| :|.|.||.|...|:...
 Worm   187 -------TRIMNVALHYMKWDWNSSQASAALVIAHCLSRTDGIPKVLSFLSRLLDSIKTHHENKK 244

  Fly   241 LNVKFGQLAAVAAILKHGKREDLLPYADKLLQWITSCQYKDD-NDFLKYKNYVKIIQRIGLVHLK 304
            |  ....|..:.|||||..|..|..:...:.:.::.....|: ...|..|..||::|||||:.||
 Worm   245 L--LLADLILLLAILKHVDRRVLTGHIGTIHEQLSFLYPIDEKKGGLICKCLVKVVQRIGLIALK 307

  Fly   305 PRIASWRYKRGTRSLATNLNQTTAAGGEP---------------VVLEQSLEEGEEIVVPDAIEE 354
            ||..||.|.||.|.|...|:.......||               :..|....:|:|:...:.:|.
 Worm   308 PRTCSWSYNRGKRLLEGMLDDNEEYSDEPSFSNKVNSNQSCNNEIDKENQWNDGDELENSEIVEF 372

  Fly   355 VIEELLQALRSGGNDIRWSAAKGLGRVTNRLPK-ELADEVIGSVIDI-LNPLEPHEAW--HGACL 415
            .:..:|:||......:|||||||:||:|.|||. :||.:|:||:|.. ...:..:.:|  |||||
 Worm   373 ALMHVLEALSHSDTAVRWSAAKGVGRITVRLPNFDLATQVVGSIISSHFGEVAEYSSWHSHGACL 437

  Fly   416 ALAELAKRGLLLPHRLEELVPLLMQALFYDEMKGYMSVGQHIRDSACYMCWAFARAYNPDDVKPF 480
            ||||||.||:|||..||::||.|..:|.::::.|....|..:||:|||..||.:|.|.|..:.|:
 Worm   438 ALAELAHRGVLLPSLLEDIVPALELSLVFEDVMGRHQNGNQVRDAACYAVWALSRTYEPSMMAPY 502

  Fly   481 VHKISSGLLTVAVFDREVNCRRAASAAFQESVGRLGNFPFGIEISTTTDFYSVGIRQNSYLNISD 545
            :.:::|.||..|:|||:||.|||||||.||.|||..|...||.:..:.|:::|..||..|.::..
 Worm   503 LQRLASALLCGALFDRQVNLRRAASAALQEMVGRQKNVSHGIPLIQSVDYFAVTNRQKCYEHLCV 567

  Fly   546 YIAQFEVYREPLINHLVQHKVSHWDSAIRELTAKALHKLSLWEPEYMAAVVLPQLLAKTDTIDIN 610
            .:|::..|...::.||:..||.|||..|||..|.:|.|:|....|.::.....::|  .|.:..:
 Worm   568 PVAEYSTYSAIILRHLITKKVVHWDEKIREQAAISLEKISEIRLENVSDDYYMEIL--DDFLKAS 630

  Fly   611 C--------RHGCVLAMGEIT--LTLRKLEEKSDPQVVYLSNQRVAELNELIITFLDKNFYRGMS 665
            |        |||.:||.|.:.  ||.|.::..|       ....:|.:..::..|.|..   ...
 Worm   631 CETRISPFLRHGYLLASGHLIKGLTSRGMDFSS-------KQTEIAWIPHILWPFCDMT---TQP 685

  Fly   666 GDLMKSCTSSYIKNCSLAKLQATPECLVS-WQKVIDSCLITKSNAIRDGAVEAFGELCTTYYCSD 729
            |.|::.....:|:..|.:|.....|...| |..|:...:......||..|..|.||...||..:|
 Worm   686 GALIRRTLCKFIQLVSASKKVLLLEKDKSEWLDVLLQLITDPREIIRSLAKTAVGEFVMTYLMND 750

  Fly   730 SRHGENEAI--INTYLTGA---DNDLEEHIRMGYIAALGVLPSFMIRCHLQAI----LDSLVKHS 785
                 .|.|  :.|.:..|   .:|..|.|.||.|..         ..:.:|:    .:||....
 Worm   751 -----EELIQKVKTRVIAAMTKCSDESERIGMGMICE---------SLNSEAVDYEMFESLCNTI 801

  Fly   786 LTPLQAVLVGEMGDRENIQAYRWSEARTQSVLALTKLVKTVGYGGGIDSFAEPKNFNKV----IE 846
            |||..:             ..:|:.||.|:|.||.::        .::|..|  .||::    .|
 Worm   802 LTPTSS-------------DAKWALARQQTVFALNRI--------SVNSSTE--TFNRIGQKCFE 843

  Fly   847 CLLRALQEYTLDNRGDIGAWVREAAMSSLYEIVT---TCPPDLLAPEQVHEIVVGFMQQAVEKID 908
            .|.:|:.:||....||||.:||||:|.::..|:.   |.||.|  .|.|.:.....:||:.|:|.
 Worm   844 TLYKAMTDYTTSANGDIGRFVREASMRAMSTILVDAKTEPPFL--DEHVIKSAKYMVQQSAERIS 906

  Fly   909 RTRG-----LGGRLCCQLIHHQPRIPYIREHSKLLEIFPADADSVLWLFADHTFPLFCELLSL-P 967
            |||.     |...:.|::...  .:|:|   ..|:.|:....|.:    :|.|......||.| .
 Worm   907 RTRECACACLKSLVKCEITGR--CLPHI---DLLMNIYSEPMDFI----SDRTVFQLKPLLDLGS 962

  Fly   968 DYSKRVLLGLSASIGQLTESLIKYASSALFHFLRSNPETVPR---LCSEVVQIFEEHLLNERVTY 1029
            :|.::::||:..|.|.|.|...|.|...|....|...|..||   ..|....:|:......|:..
 Worm   963 EYYEQLILGIVVSAGGLAEGTQKTAKQLLLDHQREICENKPRFDHFLSTCADLFQRARKVNRIGN 1027

  Fly  1030 PLLSFLDILIGSGTVESVLHDEANPFAEDIFRLLNLEVKGYKKLYKTATSISAFCQLLQVPRLSK 1094
            ..:..|..:.|:..:.....:.:....|.:..:..:.|:. ..:.:...||.:..:||...:.|.
 Worm  1028 SFMQILPQIFGNLGIYEQCPETSESIIEMVDTMKTIAVRS-SMMSRQRLSIDSLGELLNCGKKST 1091

  Fly  1095 RILSKLSVF---LGLQHVHVRKTAATKLYEALALHGDVTEVPEENMDEILTLLSETDW 1149
            ...|.|::.   |..|...:||:||.:|||.|.       ..||:.||:|.:|:.|:|
 Worm  1092 VYRSALTMILDTLNSQQPVLRKSAAERLYEHLC-------CAEESDDEVLEVLATTNW 1142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBCDNP_608648.1 TFCD_C 24..>584 CDD:303064 200/594 (34%)
HEAT repeat 355..383 CDD:293787 12/27 (44%)
HEAT repeat 393..423 CDD:293787 16/32 (50%)
TFCD_C 890..1075 CDD:289385 42/193 (22%)
tbcd-1NP_001369974.1 TFCD_C <359..>928 CDD:418705 198/621 (32%)
HEAT repeat 373..401 CDD:293787 12/27 (44%)
HEAT repeat 411..444 CDD:293787 15/32 (47%)
HEAT repeat 455..492 CDD:293787 13/36 (36%)
HEAT repeat 503..533 CDD:293787 17/29 (59%)
TFCD_C 897..1072 CDD:403718 40/184 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158311
Domainoid 1 1.000 341 1.000 Domainoid score I579
eggNOG 1 0.900 - - E1_COG2116
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 384 1.000 Inparanoid score I1166
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55142
OrthoDB 1 1.010 - - D79003at2759
OrthoFinder 1 1.000 - - FOG0004779
OrthoInspector 1 1.000 - - oto17213
orthoMCL 1 0.900 - - OOG6_102599
Panther 1 1.100 - - LDO PTHR12658
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R52
SonicParanoid 1 1.000 - - X3933
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.800

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