DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(dx) and RSP5

DIOPT Version :9

Sequence 1:NP_001259898.1 Gene:Su(dx) / 33379 FlyBaseID:FBgn0003557 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_011051.3 Gene:RSP5 / 856862 SGDID:S000000927 Length:809 Species:Saccharomyces cerevisiae


Alignment Length:958 Identity:346/958 - (36%)
Similarity:479/958 - (50%) Gaps:212/958 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 SVTIE----EASLRNNGFLKPNPYVELLIDSKSKRKTDLVKNSYLPKWNEEFTV-LITPNSTLHF 111
            |::::    |:..:.:.|..|:|:..|.||....:.|...|.:..|.|||.|.. .|..||.|..
Yeast     4 SISVKLVAAESLYKRDVFRSPDPFAVLTIDGYQTKSTSAAKKTLNPYWNETFKFDDINENSILTI 68

  Fly   112 KVLDHSSFRK--DAMLGERIINLAHILQHY-------NGRCEFLELTIDLFVTSKSDNRQTKSGE 167
            :|.|...|:|  ...||...:.:..:|.|.       :||.....:|.||   .||::....||.
Yeast    69 QVFDQKKFKKKDQGFLGVVNVRVGDVLGHLDEDTATSSGRPREETITRDL---KKSNDGMAVSGR 130

  Fly   168 LVAILNGLKLDMSKLQIQPVAGQQNGNPPVQAVNPSVVSDAAAGRSCMIYGGVRARMRLRSSSGN 232
            |:.:|       |||        .:.:|..||  ||              |...:.....||:..
Yeast   131 LIVVL-------SKL--------PSSSPHSQA--PS--------------GHTASSSTNTSSTTR 164

  Fly   233 SNGGETRSPLPNGGGDHRRSTQAPPVWEQQQQQSQNQQQPLRMVNGSGAAVPQTAPYPQQPPAPA 297
            :||..|.|       ....||..|.                   .|:..||..|           
Yeast   165 TNGHSTSS-------TRNHSTSHPS-------------------RGTAQAVEST----------- 192

  Fly   298 LARPLTQVYGALPENTQPAAVYLPAGGGAAVGPPGVAGPPIEQPGVGLPVSQSTDPQLQTQPADD 362
                                  |.:|..||..                  :.:|..:.....:..
Yeast   193 ----------------------LQSGTTAATN------------------TATTSHRSTNSTSSA 217

  Fly   363 EPLPAGWEIRLDQYGRRYYVDHNTRSTYWEKPTPLPPGWEIRKDGRGRVYYVDHNTRKTTWQRPN 427
            ....:.:|   |||||                  ||||||.|.|..||.||||||||.|||:||.
Yeast   218 TRQYSSFE---DQYGR------------------LPPGWERRTDNFGRTYYVDHNTRTTTWKRPT 261

  Fly   428 SERLMHFQHWQGQRAHVVSQGNQRYLYSQQQQQP-------------TAVTAQV----------- 468
            .::.      :.:|      |||....::.:::.             ::||.||           
Yeast   262 LDQT------EAER------GNQLNANTELERRQHRGRTLPGGSSDNSSVTVQVGGGSNIPPVNG 314

  Fly   469 --------TQDDEDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPR--------------TQ 511
                    |......||.||.|||::...:.|.|||:|..|||.|.|||              .|
Yeast   315 AAAAAFAATGGTTSGLGELPSGWEQRFTPEGRAYFVDHNTRTTTWVDPRRQQYIRTYGPTNTTIQ 379

  Fly   512 GQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGAPKGAKGVYGVPRAYERSFRW 576
            .|.||.:  ||||.|||:|.|.....:||||||:.||::|||  .|....  ..||: |:|.||.
Yeast   380 QQPVSQL--GPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPR--LPSSLD--QNVPQ-YKRDFRR 437

  Fly   577 KLSQFRYLCQSNALPSHIKITVTRQTLFEDSYHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSRE 641
            |:..||.......||....|.|.|:.:|||:|.:|||....:|::||.|.|.|||||||||||||
Yeast   438 KVIYFRSQPALRILPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYGGVSRE 502

  Fly   642 WFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFT 706
            :|||||||:.||.||||||:..:||::||||.|.:||:||.|||||||.:.:.::|.||:.:.|.
Yeast   503 FFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFV 567

  Fly   707 MPFYKRMLNKKLTIKDIETIDPEFYNSLIWVKDNNIDECGLELWFSVDFEVLGQIIHHELKENGE 771
            ...||.||.||:.::|:|.:|.|.||||.|:.:|:||.. |:|.||.|.|..|:::..:||.:|.
Yeast   568 GALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENSIDGV-LDLTFSADDERFGEVVTVDLKPDGR 631

  Fly   772 KERVTEENKEEYITLMTEWRMTRGIEQQTKTFLEGFNEVVPLEWLKYFDERELELILCGMQDVDV 836
            ...||:.||:||:.|.|:||:...:::|.|.|::||||::|.:.:..||||||||::.|:.::|:
Yeast   632 NIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDI 696

  Fly   837 EDWQRNTIYRHYNRNSKQVVWFWQFVRETDNEKRARLLQFVTGTCRVPVGGFAELMGSNGPQRFC 901
            |||:::|.||.|..:.:.:.|||:.|.|.|||:|||||||.|||.|:||.||.:|.||:||:||.
Yeast   697 EDWKKHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFT 761

  Fly   902 IEKVGKETWLPRSHTCFNRLDLPPYKSYDQLVEKLTFAIEETEGFCQE 949
            |||.|:...||:|||||||:|||.|..||.:.:|||.|:|||.||.||
Yeast   762 IEKAGEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIGFGQE 809

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(dx)NP_001259898.1 C2_E3_ubiquitin_ligase 48..173 CDD:175988 37/134 (28%)
WW 364..396 CDD:197736 6/31 (19%)
WW 397..426 CDD:278809 21/28 (75%)
WW 478..509 CDD:197736 15/30 (50%)
WW 522..554 CDD:197736 18/31 (58%)
HECTc 594..946 CDD:238033 184/351 (52%)
HECTc 620..946 CDD:214523 173/325 (53%)
RSP5NP_011051.3 HUL4 3..809 CDD:227354 344/956 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I2093
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S744
OMA 1 1.010 - - QHG52003
OrthoFinder 1 1.000 - - FOG0000080
OrthoInspector 1 1.000 - - oto100105
orthoMCL 1 0.900 - - OOG6_100256
Panther 1 1.100 - - O PTHR11254
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2273
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.800

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