DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(dx) and Herc3

DIOPT Version :10

Sequence 1:NP_476753.1 Gene:Su(dx) / 33379 FlyBaseID:FBgn0003557 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_082981.3 Gene:Herc3 / 73998 MGIID:1921248 Length:1050 Species:Mus musculus


Alignment Length:370 Identity:113/370 - (30%)
Similarity:191/370 - (51%) Gaps:25/370 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   584 LCQSNALPSHIKITVTRQTLFEDSYHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSH 648
            |.:|..|..|::    |..|..|:..::......:|::.|.:||.||||:|.|||::|:|.||..
Mouse   696 LARSPFLVLHVR----RNHLVGDALRELSIHSDIDLKKPLKVIFDGEEGVDAGGVTKEFFLLLLK 756

  Fly   649 EVLNPMYCLFEYANKNNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRM 713
            |:|||:|.:|.|...:|. |..:...:|  :| .:|..||....:|:|:...:...|.:..||::
Mouse   757 ELLNPIYGMFTYYQDSNL-LWFSDTCFV--EH-NWFHLIGITCGLAIYNSTVVDLHFPLALYKKL 817

  Fly   714 LNKKLTIKDIETIDPEFYNSLIWVKD---NNIDE--CGLELWFSVDFEVLGQIIHHELKENGEKE 773
            ||.|.:::|::.:.|....||..:.|   .:|:|  |   |.|:|..|..|.|...:|...|::.
Mouse   818 LNVKPSLEDLKELSPTEGRSLQELLDYPGEDIEETFC---LNFTVCRESYGVIEQKKLIPGGDRV 879

  Fly   774 RVTEENKEEYITLMTEWRMTRGIEQQTKTFLEGFNEVVPLEWLKYFDERELELILCGMQDVDVED 838
            .|.::|::|::.....:.....:.:....|..||.:|...:.|:.|...||..::.|..:.|.|:
Mouse   880 AVCKDNRQEFVDAYVNYIFQISVHEWYTAFSSGFLKVCGGKVLELFQPAELRAMMVGNSNYDWEE 944

  Fly   839 WQRNTIYR-HYNRNSKQVVWFWQFVRETDNEKRARLLQFVTGTCRVPVGGFAELMGSNGPQRFCI 902
            .:...:|| .|:.....|..||:...|...||:.:.|.|:||:.|:|:.|.|.|       :..|
Mouse   945 LEETAVYRGDYSSTHPTVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASL-------QIII 1002

  Fly   903 EKVGK-ETWLPRSHTCFNRLDLPPYKSYDQLVEKLTFAIEETEGF 946
            :.... |.:||.:|||:|.||||.|.|.:.:..:||.|::..|||
Mouse  1003 QSTATGEEYLPVAHTCYNLLDLPKYSSKEIMKARLTQALDNYEGF 1047

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(dx)NP_476753.1 C2_E3_ubiquitin_ligase 48..173 CDD:175988
WW 364..396 CDD:197736
HUL4 <395..946 CDD:227354 111/368 (30%)
Herc3NP_082981.3 ATS1 3..341 CDD:444065
RCC1 313..377 CDD:395335
HECTc 702..1048 CDD:238033 111/364 (30%)
Blue background indicates that the domain is not in the aligned region.

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