DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(dx) and Herc4

DIOPT Version :9

Sequence 1:NP_001259898.1 Gene:Su(dx) / 33379 FlyBaseID:FBgn0003557 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_084390.1 Gene:Herc4 / 67345 MGIID:1914595 Length:1057 Species:Mus musculus


Alignment Length:530 Identity:128/530 - (24%)
Similarity:239/530 - (45%) Gaps:63/530 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   426 PNSERLM--HFQHWQGQRAHVVSQGNQRYLYSQQQQQPTAVTAQVTQDDEDALGPLPDGWEKKIQ 488
            |.|||.:  .|.|...:...::.:.|::             |.|:.|.|:..:..:.:       
Mouse   579 PPSERRIFNSFLHTALKVLEILHRVNEK-------------TGQLIQYDKFYIHEVQE------- 623

  Fly   489 SDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 553
                  .::.:|....|...:..|.:||   .|..... :|..|.....|..|...:.|..:   
Mouse   624 ------LIDIRNDYINWVQQQAYGVDVS---HGVTELA-DIPVTICTYPFVFDAQAKTTLLQ--- 675

  Fly   554 PGAPKGAKGVYGVPRAYERSFRWKLSQFRYLCQSNALPSHIKITVTRQTLFEDSYHQIMRLPAYE 618
                  ...|..:..|.:::.|..:|.. :|....::...:.:.|.|:.:..|:...:.:....:
Mouse   676 ------TDAVLQMQMAIDQAHRQNVSSL-FLPVIESVNPCLILVVRRENIVGDAMEVLRKTKNID 733

  Fly   619 LRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLQY 683
            .::.|.:||.||:.:|.|||.:|:|.|:..|:|:|.|.:|.| .:::..:..:..::.:.|   .
Mouse   734 YKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRY-YEDSRLIWFSDKTFEDSD---L 794

  Fly   684 FKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTIKDIETIDPEFYNS---LIWVKDNNIDE- 744
            |..||....:|:|:...:...|.:..||::|.:|.::.|::.:.|....|   |:...:::|:| 
Mouse   795 FHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPAVGRSMQQLLDYPEDDIEET 859

  Fly   745 -CGLELWFSVDFEVLGQIIHHELKENGEKERVTEENKEEYITLMTEWRMTRGIEQQTKTFLEGFN 808
             |   |.|::..|..|.....||..||....|..:|::|::....::...:.:......|..||:
Mouse   860 FC---LNFTITVENFGATEVKELVLNGADTAVNRQNRQEFVDAYVDYIFNKSVASLFDAFHAGFH 921

  Fly   809 EVVPLEWLKYFDERELELILCGMQDVDVEDWQRNTIYR-HYNRNSKQVVWFWQFVRETDNEKRAR 872
            :|...:.|..|...||:.::.|..:.|.::.::||.|: .|..:...:..||:...|...||:.:
Mouse   922 KVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWADHPTIKIFWEVFHELPLEKKKQ 986

  Fly   873 LLQFVTGTCRVPVGGFAELMGSNGPQRFCIEKV-GKETWLPRSHTCFNRLDLPPYKSYDQLVEKL 936
            .|.|:||:.|:|:.|...|       :..|:.. |.|::||.||||||.||||.|...:.|..||
Mouse   987 FLLFLTGSDRIPILGMKSL-------KLVIQSTGGGESYLPVSHTCFNLLDLPKYTEKETLRCKL 1044

  Fly   937 TFAIEETEGF 946
            ..||:..|||
Mouse  1045 IQAIDHNEGF 1054

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(dx)NP_001259898.1 C2_E3_ubiquitin_ligase 48..173 CDD:175988
WW 364..396 CDD:197736
WW 397..426 CDD:278809 128/530 (24%)
WW 478..509 CDD:197736 2/30 (7%)
WW 522..554 CDD:197736 5/31 (16%)
HECTc 594..946 CDD:238033 99/358 (28%)
HECTc 620..946 CDD:214523 96/332 (29%)
Herc4NP_084390.1 RCC1 1 1..51
RCC1 3..49 CDD:278826
RCC1 2 52..101
RCC1 52..99 CDD:278826
RCC1 3 102..154
RCC1 102..152 CDD:278826
RCC1 4 156..207
RCC1 157..205 CDD:278826
RCC1 5 208..259
RCC1 208..257 CDD:278826
RCC1 260..308 CDD:278826
RCC1 6 261..311
RCC1 7 313..366
RCC1 313..>343 CDD:278826
HECTc 709..1055 CDD:238033 101/360 (28%)
HECTc 735..1054 CDD:214523 96/332 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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