DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(dx) and Wwc2

DIOPT Version :9

Sequence 1:NP_001259898.1 Gene:Su(dx) / 33379 FlyBaseID:FBgn0003557 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_001102581.1 Gene:Wwc2 / 498630 RGDID:1559427 Length:1194 Species:Rattus norvegicus


Alignment Length:128 Identity:40/128 - (31%)
Similarity:59/128 - (46%) Gaps:39/128 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   396 PLPPGWEIRKDGRGRVYYVDHNTRKTTWQRPNSERLMHFQHWQGQRAHVVSQGNQRYLYSQQQQQ 460
            |||.|||..:|..|:|:|:|||||:|:|..|. :||                           .:
  Rat    11 PLPRGWEEARDYDGKVFYIDHNTRRTSWIDPR-DRL---------------------------TK 47

  Fly   461 PTAVTAQVTQDDEDALG-PLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQ--GQEVSLINE 520
            |.:..        |.:| .||.|||.........|:::|.|:|||.||||.|  |::..::.:
  Rat    48 PLSFA--------DCVGDELPWGWEAGFDPQIGAYYIDHINKTTQIEDPRKQWRGEQEKMLKD 102

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(dx)NP_001259898.1 C2_E3_ubiquitin_ligase 48..173 CDD:175988
WW 364..396 CDD:197736 40/128 (31%)
WW 397..426 CDD:278809 16/28 (57%)
WW 478..509 CDD:197736 13/30 (43%)
WW 522..554 CDD:197736
HECTc 594..946 CDD:238033
HECTc 620..946 CDD:214523
Wwc2NP_001102581.1 WW 12..41 CDD:278809 16/28 (57%)
WW 59..88 CDD:278809 12/28 (43%)
DUF342 <283..385 CDD:302792
YlqD 351..>420 CDD:287979
C2_Kibra 699..822 CDD:176062
Phage_Nu1 <1095..>1153 CDD:294991
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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