DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(dx) and ctrip

DIOPT Version :9

Sequence 1:NP_001259898.1 Gene:Su(dx) / 33379 FlyBaseID:FBgn0003557 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_001189170.1 Gene:ctrip / 40596 FlyBaseID:FBgn0260794 Length:3140 Species:Drosophila melanogaster


Alignment Length:1011 Identity:194/1011 - (19%)
Similarity:341/1011 - (33%) Gaps:332/1011 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NGLPAGAASGGMEAGQTVNGAGSASPTPTSSSGAGASGSANQGYHQLSVTIEEASLRNNGFLKPN 69
            :|..|||||........|....|:|.:.:|...|.:|.|::.|     |.....||........:
  Fly  2381 SGAAAGAASSSSSCSSGVQKQQSSSSSASSCVNATSSCSSSSG-----VASGGGSLTKKAHKSSS 2440

  Fly    70 PYVELLIDSKSKRKTDLVKNSYLPKWNEEFTVLITP------NSTLHFKVLDHSSFRKDAMLGER 128
            .::        ::||:|        |:|....::..      :|:|...|:.......||:...|
  Fly  2441 KFM--------RKKTEL--------WHEGIAPVVISALKPFLSSSLPADVVTVQDASLDALCMLR 2489

  Fly   129 IINLAHIL-QHYNGRCEFLELTIDLFVTSKSDNRQTKSGELVAILNGLKLDMSKLQIQPVAGQQN 192
            :|   |.| :|::   ......:...:..:||....|   ::|..|        .|:|.......
  Fly  2490 VI---HALNRHWD---HLYGCVVRQNIIPQSDFIHPK---IMAKAN--------RQLQDPLVIMT 2537

  Fly   193 GNPPVQAVNPSVVSDAAAGRSC-----------MIYGGV----RARMRLRSSSGNSNGGETRSPL 242
            ||.|...  |.:      |.:|           :.|...    ||..||..::.:.|..|:    
  Fly  2538 GNLPQWL--PQI------GMACPFLFPFETRHLLFYATSFDRDRALQRLLDTTPDLNAAES---- 2590

  Fly   243 PNGGGDHRRSTQAPPVWEQQQQQSQNQQQPLRMVNGSGAAVPQTAPYPQQPPAPALARPLTQVYG 307
                     |.:..|..:::::                 |:.:|....|       |..:.|.:|
  Fly  2591 ---------SERVAPRLDRRKR-----------------AISRTEILKQ-------AEHILQDFG 2622

  Fly   308 ---ALPENTQPAAVYLPAGGGAAVGPP----GVAGPPIEQPGVGLPVSQSTDPQLQTQPADDEPL 365
               ||.|......|      |..:||.    .:....:::..:||  ...:|...|......:.:
  Fly  2623 HSKALLEIQYENEV------GTGLGPTLEFYALVSAELQRTDLGL--WNGSDSYKQNSVTIVDVV 2679

  Fly   366 PAGWEIRLDQYGRRYYVDHNTRSTYWEKPTPLPPGWEIRKDGRGRVYYVDHNTRKTTWQRPNSER 430
            .|...:        .:::....:|..::.||...|..:          |..:|..||   ..:::
  Fly  2680 KANSAV--------LHIEDALEATTTDQNTPAVAGASL----------VSSSTTTTT---TTAQQ 2723

  Fly   431 LMHFQHWQGQRAHVVSQGNQRYLYSQQQQQPTAVTAQVTQDDEDALGPLPDGWEKKIQSDNRVYF 495
            ..|.......|:||:..|        ..|||...::.....:|:||..:.........|.|....
  Fly  2724 HQHPPTRSSSRSHVLRSG--------AGQQPVEHSSSSAGANENALNMVIAQQFSDTNSANPAAI 2780

  Fly   496 VNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGAPKGA 560
            .|..:.||                                ....|.|||  ||            
  Fly  2781 DNPSSTTT--------------------------------ATTVVQHNT--TT------------ 2799

  Fly   561 KGVYGVPRAYERSFRWKLSQFRYLCQSNALPSHIKITVTRQTLFEDSYHQIMRLPAYELRRRLYI 625
                                     .::::     ||.|..|.:..:.|.:..||          
  Fly  2800 -------------------------NNSSI-----ITTTTTTSYVHAVHGLFPLP---------- 2824

  Fly   626 IFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLQYFKFIGRF 690
                                               ..|::...|:..|.       ..|||:|:|
  Fly  2825 -----------------------------------LGKSSKLPQMTKAK-------AKFKFLGKF 2847

  Fly   691 IAMALYHGRFIYSGFTMPFYKRMLNKK--LTIKDIETIDPEFYNSLIWVK-----------DNNI 742
            :|.|:...|.:...|::|||:.:::::  :.:.|:..:.||..|:|:.::           |.||
  Fly  2848 MAKAVMDSRMLDLPFSLPFYRWLVSEEHSIGLADLMRVAPEVQNTLVRLQDLVRQREYILSDPNI 2912

  Fly   743 D-------------------ECGLELWFSVDFEVLGQIIHHELKENGEKERVTEENKEEYITLMT 788
            |                   :.||      ||.:.|. .:.||...|....||..|..:||:|:|
  Fly  2913 DAMEKTEKIEQLDLDGCPIADLGL------DFVLPGH-ANIELCRGGRDTPVTVHNLHQYISLVT 2970

  Fly   789 EWRMTRGIEQQTKTFLEGFNEVVPLEWLKYFDERELELILCGM-QDVDVEDWQRNTIYRH----- 847
            .|.:..|:::|.:...|||:.|.|::.|:.|...|||.:.||. .:.....|:...:...     
  Fly  2971 YWFLIEGVQKQFEALREGFDSVFPIQRLRMFYPEELECVFCGSGSEQQHSRWEIKMLQESCRTDH 3035

  Fly   848 -YNRNSKQVVWFWQFVRETDNEKRARLLQFVTGTCRVPVGGFAELMGSNGPQRFCIEKVGKET-- 909
             ::::|:.:.:.::.:...:.:::...||||||:.|:|.|||..|.    |....:.|...|.  
  Fly  3036 GFHQDSQAIQYLYEILASYNRDEQRAFLQFVTGSPRLPTGGFKALT----PPLTIVRKTLDENQN 3096

  Fly   910 ---WLPRSHTCFNRLDLPPYKSYDQLVEKLTFAIEE 942
               :||...||.|.|.||.|.|.:.:.:||..|..|
  Fly  3097 PNDYLPSVMTCVNYLKLPDYSSREVMRQKLKVAANE 3132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(dx)NP_001259898.1 C2_E3_ubiquitin_ligase 48..173 CDD:175988 22/131 (17%)
WW 364..396 CDD:197736 2/31 (6%)
WW 397..426 CDD:278809 5/28 (18%)
WW 478..509 CDD:197736 5/30 (17%)
WW 522..554 CDD:197736 6/31 (19%)
HECTc 594..946 CDD:238033 92/393 (23%)
HECTc 620..946 CDD:214523 85/367 (23%)
ctripNP_001189170.1 Extensin_2 <688..731 CDD:252669
WWE 1409..1481 CDD:128922
FAM199X <1985..2074 CDD:292442
HECTc <2818..3138 CDD:294058 88/378 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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