DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(dx) and HERC2

DIOPT Version :10

Sequence 1:NP_476753.1 Gene:Su(dx) / 33379 FlyBaseID:FBgn0003557 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster


Alignment Length:366 Identity:92/366 - (25%)
Similarity:166/366 - (45%) Gaps:53/366 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   611 IMRLP-----AYELRRRLY-IIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLF---------EY 660
            :.:||     |..|..|:: :.|.||...|.||...|....:..|:.|....|.         ..
  Fly  4537 VQKLPLLTQEALALPHRVWKVKFVGESVDDCGGGYSESIAEMCDELQNGSVPLLINTPNGRGEAG 4601

  Fly   661 ANKNNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTIKDIET 725
            ||::.:.|....:|.:   .:..|:|:|..:.:|:..|..:......|.::::..:.|...|:..
  Fly  4602 ANRDCFLLDPTLSSVL---QMNMFRFLGVLMGIAVRTGSPLSINLAEPVWRQLTGEVLRPTDLTE 4663

  Fly   726 IDPEFYNSLIWVKDNNIDE-----CGLELWFSVDFEVLGQIIHHELKENGEKERVTEENKEEYIT 785
            :|.::...|:.::  |:|:     ..|||.||.. ...|    ||:..:.....::..|:.||:.
  Fly  4664 VDRDYVAGLLCIR--NMDDDPKLFTALELPFSTS-SARG----HEVPLSTRYTHISPRNRAEYVR 4721

  Fly   786 LMTEWRMTRGIEQQTKTFLEGFNEVVPLEWLKYFDERELELILCGMQDVDVEDWQRNTIYRHYNR 850
            |...:|: ...::|.|...:|.::|:|:..|..|...||:.::||..|:.:...:....|:.::.
  Fly  4722 LALGFRL-HEFDEQVKAVRDGMSKVIPVPLLSLFSAAELQAMVCGSPDIPLGLLKSVATYKGFDP 4785

  Fly   851 NSKQVVWFWQFVRETDNEKRARLLQFVTGTCRVP--VGGF------AELMGSNGPQRFCIEKVGK 907
            :|..|.|||:.:.|..|::|:..|:||.|..|:|  :..|      .:::..|.|..|       
  Fly  4786 SSALVTWFWEVMEEFTNQERSLFLRFVWGRTRLPRTIADFRGRDFVLQVLEKNPPDHF------- 4843

  Fly   908 ETWLPRSHTCFNRLDLPPYKSYDQLVEKLTFAIEETEGFCQ 948
               ||.|:|||..|.:|.|.....|:|||.:||.    ||:
  Fly  4844 ---LPESYTCFFLLKMPRYSCKAVLLEKLKYAIH----FCK 4877

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(dx)NP_476753.1 C2_E3_ubiquitin_ligase 48..173 CDD:175988
WW 364..396 CDD:197736
HUL4 <395..946 CDD:227354 90/362 (25%)
HERC2NP_608388.2 ATS1 625..>894 CDD:444065
Cyt-b5 1292..1364 CDD:459698
MIB_HERC2 1928..1988 CDD:461991
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:463286
APC10-HERC2 2762..2932 CDD:176485
ATS1 2987..3320 CDD:444065
RCC1 3302..3350 CDD:395335
ATS1 4050..4389 CDD:444065
HECTc 4509..4880 CDD:238033 92/366 (25%)
Blue background indicates that the domain is not in the aligned region.

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