DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(dx) and pub2

DIOPT Version :10

Sequence 1:NP_476753.1 Gene:Su(dx) / 33379 FlyBaseID:FBgn0003557 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_593926.1 Gene:pub2 / 2542432 PomBaseID:SPAC1805.15C Length:671 Species:Schizosaccharomyces pombe


Alignment Length:621 Identity:218/621 - (35%)
Similarity:322/621 - (51%) Gaps:102/621 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   345 LPVSQSTDPQLQTQPADDEPLPAGWEIRLDQYGRRYYVDHNTRSTYWEKPTPLPPGWEIRKDGRG 409
            ||..:|   |:.|...||.. ...||.|:|::|..||:.....|.                    
pombe   137 LPADKS---QICTDIIDDAS-GCAWETRIDEFGHVYYLKSPQLSV-------------------- 177

  Fly   410 RVYYVDHNTRKTTWQRPNSERLMHFQHWQGQRAHVVSQGNQRYLYSQQQQQPTAVTAQ------- 467
             :..:.|            |:|.:..  ..|...|.||    :|::.|.:....:..:       
pombe   178 -ISAISH------------EKLENLT--PKQLKEVFSQ----FLFNNQSKSSLKINLEYKVIKHL 223

  Fly   468 ---------VTQDDEDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPL 523
                     |.|......||||.|||.::..|..||||:|..:||.|.|||..            
pombe   224 LEHYPLALSVRQQVAVEKGPLPAGWEMRLSEDYHVYFVDHSTKTTTWSDPRDN------------ 276

  Fly   524 PPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGAPKGAKGVYGVPRAYERSFRWKLSQFRYLCQSN 588
                    ..|.:.  |..||                ..:..:...|:|...:...:....... 
pombe   277 --------VVASDS--VSENT----------------DSIQQINDEYQRKIAYMYDRPEMAVND- 314

  Fly   589 ALPSHIKITVTRQTLFEDSYHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNP 653
               :.:::.|:|.|.|||:|..|.:|...:::::|.|.||.|:||||||||||:|::|||.:.||
pombe   315 ---AQLQLKVSRATTFEDAYDIISKLSVSDMKKKLLIRFRNEDGLDYGGVSREFFYILSHAIFNP 376

  Fly   654 MYCLFEYANKNNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKL 718
            .|.|||||..:||.|||:|.|.||||...||:|:||.:.:|:||.|::...|.:|||||:|.|.|
pombe   377 GYSLFEYATDDNYGLQISPLSSVNPDFRSYFRFVGRVMGLAIYHRRYLDVQFVLPFYKRILQKPL 441

  Fly   719 TIKDIETIDPEFYNSLIWVKDNNIDECGLELWFSVDFEVLGQIIHHELKENGEKERVTEENKEEY 783
            .::|::.:|..:|.||.|:|:|::|| .|.|.|||:....|:.:..:|..||....|..:||..|
pombe   442 CLEDVKDVDEVYYESLKWIKNNDVDE-SLCLNFSVEENRFGESVTVDLIPNGRNIAVNNQNKMNY 505

  Fly   784 ITLMTEWRMTRGIEQQTKTFLEGFNEVVPLEWLKYFDERELELILCGMQDVDVEDWQRNTIYRHY 848
            :..:||.::....|:|......|.||::|...|:.|:|.||:.:|.|.:|:||:||:|.|.||.|
pombe   506 LKALTEHKLVTSTEEQFNALKGGLNELIPDSVLQIFNENELDTLLNGKRDIDVQDWKRFTDYRSY 570

  Fly   849 NRNSKQVVWFWQFVRETDNEKRARLLQFVTGTCRVPVGGFAELMGSNGPQRFCIEKVGKETWLPR 913
            ......|:|||:.:.|...||:|:||||.|||.|:|:.||.::.||:||::|.|||||..:.||:
pombe   571 TETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSGFKDMHGSDGPRKFTIEKVGHISQLPK 635

  Fly   914 SHTCFNRLDLPPYKSYDQLVEKLTFAIEETEGFCQE 949
            :||||||||:|||.|.::|.:|||.||:||.||..|
pombe   636 AHTCFNRLDIPPYNSKEELEQKLTIAIQETAGFGTE 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(dx)NP_476753.1 C2_E3_ubiquitin_ligase 48..173 CDD:175988
WW 364..396 CDD:197736 8/31 (26%)
HUL4 <395..946 CDD:227354 200/566 (35%)
pub2NP_593926.1 HUL4 1..671 CDD:227354 217/619 (35%)
Blue background indicates that the domain is not in the aligned region.

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