DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Su(dx) and hecw-1

DIOPT Version :9

Sequence 1:NP_001259898.1 Gene:Su(dx) / 33379 FlyBaseID:FBgn0003557 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_001317872.1 Gene:hecw-1 / 175438 WormBaseID:WBGene00009738 Length:1247 Species:Caenorhabditis elegans


Alignment Length:694 Identity:207/694 - (29%)
Similarity:308/694 - (44%) Gaps:138/694 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   350 STDPQLQTQPADD---------EPLPAGWEIRLDQYGRRYYVDHNTRSTYWEKPTPL-----PPG 400
            |.:|:...:.|.|         .|..:.|:..||...|::||:|.|:.|.|.||..|     .|.
 Worm   580 SIEPKTSKKSAPDIMEIASSSQTPPESHWKTYLDAKKRKFYVNHVTKETRWTKPDTLNNNHIEPE 644

  Fly   401 WEIRK-----DGRGRVYYVDHNTRKTTWQR----PNSERLMHFQHWQGQRAHVVSQGNQRYLY-- 454
            ..:.|     ....|..::  ..|:|...|    |.|:.:..||..:.:.|...:| :...:|  
 Worm   645 TPVHKRLSDRSASPRNSFI--TPRRTITVRSAGCPKSDLIQFFQRDEFKTALYENQ-DAMQIYNE 706

  Fly   455 ------------------SQQQQQPTAVT-----AQVTQDDEDALGPLPDGWEKKIQSDNRVYFV 496
                              |:.:.||..|.     |.:||       |||.||| .|..:||..|:
 Worm   707 CSVVRHAIHRIQKDLDPPSKFENQPLFVRFVNLFADITQ-------PLPSGWE-CITMNNRTVFL 763

  Fly   497 NHKNRTTQWEDPRTQGQEVSLINEGPLPPG------------------WEIRYTAAG-------- 535
            ||.|:.|.:.|||.:..|......|...|.                  .::|..|..        
 Worm   764 NHANKETSFYDPRIRRFETKTSRRGRSVPSRSSTAHKGKIDHALISKCEDLRKIAQDNFPQIAER 828

  Fly   536 --------ERF-------------------FVDHNTRRTTFEDPRPGAPKGAKGVYGVPRAYERS 573
                    |||                   .:|.||.:...|..            .:...||..
 Worm   829 ISKKLMLIERFGGLAVASLANDLDITLALSMLDSNTEKLAGEGD------------NIKMFYEDM 881

  Fly   574 FRWKLSQFRYLCQSNALPSHIKITVTRQTLFEDSYHQIMRLPAYELRR-RLYIIFRGEEGLDYGG 637
            .:.||.:.         ||.:...|:|..|.:|::..|:.:..:.|:: ||:|.|.||..|||||
 Worm   882 KKEKLGKG---------PSRLCWKVSRDRLLDDAFRIILNVDPFVLKKSRLHIRFEGELALDYGG 937

  Fly   638 VSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIY 702
            :|||:|.|||.|:.:|....|||.. |:|.||:.|.........::....||.:|:|:.|..:|.
 Worm   938 LSREFFILLSRELFHPKNGYFEYEG-NDYHLQLRPRGCETEKEKKWLILCGRVLALAVIHRCYID 1001

  Fly   703 SGFTMPFYKRMLNKKLTIKDIETIDPEFYNSLIWVKDNNIDECGLELWFSVDFEVLGQIIHHELK 767
            ..||..|||.:..:.:|:.|.:..|.|||.|:.|:.:|::.:  ||:.|.....|.|::...||.
 Worm  1002 VFFTNVFYKSLQKRPVTLMDFKESDAEFYKSMNWLLENDVVD--LEMSFVYSSMVNGKLAEQELV 1064

  Fly   768 ENGEKERVTEENKEEYITLMTEWRMTRGIEQQTKTFLEGFNEVVPLEWLKYFDERELELILCGMQ 832
            ..||.:.|||.||.|:|.||.:.:..||:|:..:..|..||:::....|...:..:|:.||.|..
 Worm  1065 PGGESQMVTEANKAEFIDLMCQKKAIRGVEKPLEILLTSFNQILNDNLLNSLESSDLKRILSGSL 1129

  Fly   833 DVDVEDWQRNTIYR-HYNRNSKQVVWFWQFVRETDNEKRARLLQFVTGTCRVPVGGFAELMGSNG 896
            ::|:.||:.||||: .|:.....|.|||:.:....|::|..||.||||:..||..||:.|.|:..
 Worm  1130 ELDLNDWRTNTIYKGGYSDCHIVVEWFWEVIETMTNQERFDLLLFVTGSSSVPFEGFSALRGNEE 1194

  Fly   897 PQRFCIEKVGKETWLPRSHTCFNRLDLPPYKSYDQLVEKLTFAI 940
            ..:|||||.|..|..||:|||||||.||.|.:..||..||..||
 Worm  1195 ISKFCIEKWGDATSFPRAHTCFNRLQLPSYNTKQQLKSKLQQAI 1238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(dx)NP_001259898.1 C2_E3_ubiquitin_ligase 48..173 CDD:175988
WW 364..396 CDD:197736 13/31 (42%)
WW 397..426 CDD:278809 7/42 (17%)
WW 478..509 CDD:197736 15/30 (50%)
WW 522..554 CDD:197736 10/84 (12%)
HECTc 594..946 CDD:238033 134/349 (38%)
HECTc 620..946 CDD:214523 128/323 (40%)
hecw-1NP_001317872.1 FBA_2 230..285 CDD:311601
WW 603..634 CDD:197736 12/30 (40%)
WW 746..777 CDD:197736 16/31 (52%)
HECTc 918..1244 CDD:214523 129/324 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000080
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.