DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(dx) and Ube3b

DIOPT Version :10

Sequence 1:NP_476753.1 Gene:Su(dx) / 33379 FlyBaseID:FBgn0003557 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_473434.2 Gene:Ube3b / 117146 MGIID:1891295 Length:1070 Species:Mus musculus


Alignment Length:395 Identity:124/395 - (31%)
Similarity:199/395 - (50%) Gaps:38/395 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   587 SNALPSHIKITVTRQTLFEDSYHQIMRLPAYELRRRLYIIFRG-----EEGLDYGGVSREWFFLL 646
            |:|.|....||:.|..:.||.|.|:.:|..:.::..:.:.|..     |.|:|..||.:|:...:
Mouse   676 SSASPHVTHITIRRSRMLEDGYEQLRQLSQHAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEI 740

  Fly   647 SHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYK 711
            ...|.:|...||: ....:..|..:|.||::.::||.|:|:|:.:..|:|.|..:...|...|..
Mouse   741 IKRVFDPALNLFK-TTSGDERLYPSPTSYIHENYLQLFEFVGKMLGKAVYEGIVVDVPFASFFLS 804

  Fly   712 RMLNKK-----LTIKDIETIDPEFYNSLIWVK--DNNIDECGLELWFSVDFEVLGQIIHHELKEN 769
            :||...     .::.::.::|.|||.:|..:|  |.:|.:.||.|  |.|.:|:||::.|||...
Mouse   805 QMLGHHHSVFYSSVDELPSLDSEFYKNLTSIKRYDGDIADLGLTL--SYDEDVMGQLVCHELVPG 867

  Fly   770 GEKERVTEENKEEYITLMTEWRMTRGIEQQTKTFLEGFNEVVPLEWLKYFDERELELILCG-MQD 833
            |:...||:|||..||.||..:||...|:.||...:.||..::..||::.|...||:.::.| ..:
Mouse   868 GKTIPVTDENKISYIHLMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAE 932

  Fly   834 VDVEDWQRNTI-YRHYNRNSKQVVWFWQFV-RETDNEKRARLLQFVTGTCRVPVGGFAEL----- 891
            :|:||.:::|: |..::.:.:.::|.|..: .:...|:||..|:|||...|.|:.|||.|     
Mouse   933 IDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPEERAMFLKFVTSCSRPPLLGFAYLKPPFS 997

  Fly   892 ---------------MGSNGPQRFCIEKVGKETWLPRSHTCFNRLDLPPYKSYDQLVEKLTFAIE 941
                           :||.....|.|.|......||.|.||||.|.||.|.....|.|||.:||.
Mouse   998 IRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAIS 1062

  Fly   942 ETEGF 946
            ...||
Mouse  1063 MNTGF 1067

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(dx)NP_476753.1 C2_E3_ubiquitin_ligase 48..173 CDD:175988
WW 364..396 CDD:197736
HUL4 <395..946 CDD:227354 122/393 (31%)
Ube3bNP_473434.2 HECTc 684..1068 CDD:238033 121/387 (31%)
Blue background indicates that the domain is not in the aligned region.

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