DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Su(dx) and itcha

DIOPT Version :10

Sequence 1:NP_476753.1 Gene:Su(dx) / 33379 FlyBaseID:FBgn0003557 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_001274024.1 Gene:itcha / 100331274 ZFINID:ZDB-GENE-120919-4 Length:851 Species:Danio rerio


Alignment Length:923 Identity:480/923 - (52%)
Similarity:604/923 - (65%) Gaps:98/923 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 QLSVTIEEASLRNN--GFLKPNPYVELLIDSKSKRKTDLVKNSYLPKWNEEFTVLITPNSTLHFK 112
            ||.:|:..|.||.|  .:..|:||||:.:|.:|| ||:...|::.|||.:..||::||.|.|.|:
Zfish     4 QLQITVLSAKLRENKKNWFGPSPYVEVFVDGQSK-KTEKCTNTHSPKWKQSLTVIVTPFSKLIFR 67

  Fly   113 VLDHSSFRKDAMLGERIINLAHILQHYNGR-CEFLELTIDLFVTSKSDNRQTKSGELVAILNGLK 176
            |..|.:.:.|.:||...:.::..|:..|.: ||.:: |:.|   |....|..:.|:|...|:||:
Zfish    68 VWSHQTLKADILLGVASLEVSETLKANNMKICEVVQ-TLQL---SSDRGRSEQVGDLSLCLDGLQ 128

  Fly   177 LDMSKLQIQPVAGQQNGNPPVQAVNPSVVSDAAAGRSCMIYGGVRARMRLRSSSGNSNGGETRSP 241
            :|....    .:.:|..|..|.            |.|.:....:|:|     .|..|:.....:|
Zfish   129 VDAETF----ASEEQKHNAVVN------------GESRLNGDAIRSR-----DSSPSSDITDDAP 172

  Fly   242 LPNGGGDHRRSTQAPPVWEQQQQQSQNQQQPLRMVNGSGAAVPQT----APYPQQPPAPALARPL 302
            ||||                            ..|..|.:|.|.|    ||.|.:|..|..|.|.
Zfish   173 LPNG----------------------------HAVGSSASASPSTGALRAPRPLRPQRPPPASPH 209

  Fly   303 TQVYGALPENTQPAAVYLPAGGGAAVGP---PGVA--GPPIEQ---PGVGLPVSQSTDPQLQTQP 359
            ...     .:|..:....|..|.:|..|   |.|.  |....|   .|.|...:....|.....|
Zfish   210 KHT-----SSTASSTGSTPTHGSSAPSPEMSPRVCVNGETESQGSSSGSGSNQAPRASPTPPRAP 269

  Fly   360 A-DDEPLPAGWEIRLDQYGRRYYVDHNTRSTYWEKPTPLPPGWEIRKDGRGRVYYVDHNTRKTTW 423
            | .:.|||.|||.|.||.||.|||||..:.|.||:|.|||||||.|.|..||||||||..|.|||
Zfish   270 AITNGPLPPGWEQRADQNGRVYYVDHIEKRTTWERPEPLPPGWERRLDPMGRVYYVDHINRTTTW 334

  Fly   424 QRPNSERLMHFQHWQGQRAHVVSQG-----NQRYLYS-QQQQQPTAVTAQVTQDDEDALGPLPDG 482
            |||..|.:.:::.||.||:.:  ||     |||::|. |:|..|||      ..:.|.|||||.|
Zfish   335 QRPTLESVRNYEEWQNQRSQL--QGAMQRFNQRFIYGLQEQLAPTA------NKEFDPLGPLPSG 391

  Fly   483 WEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRT 547
            |||:..|:.|:|||:|..|:||||||||||    |:||.|||.|||:|:|..|..:|||||.|.|
Zfish   392 WEKRTDSNRRMYFVHHPTRSTQWEDPRTQG----LLNEKPLPEGWEMRFTVDGIPYFVDHNRRTT 452

  Fly   548 TFEDPRPGAPKGAKGVYGVPR-AYERSFRWKLSQFRYLCQSNALPSHIKITVTRQTLFEDSYHQI 611
            |:.|||.|......|    |: .|.|.|:.|:..||:.||..::|.||||.|:|:||||||:.||
Zfish   453 TYIDPRTGKSSLENG----PQITYVRDFKAKVHYFRFWCQQLSMPQHIKIHVSRKTLFEDSFQQI 513

  Fly   612 MRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYV 676
            |.....:|||||:|||.||||||||||:||||||||||||||||||||||.|:||.|||||||.:
Zfish   514 MGCHPQDLRRRLWIIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAGKDNYCLQINPASSI 578

  Fly   677 NPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTIKDIETIDPEFYNSLIWVKDNN 741
            |||||:|||||||||||||:||:||.:||::|||||:|||.|.:||:|:|||||||||||:||||
Zfish   579 NPDHLKYFKFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPLALKDLESIDPEFYNSLIWIKDNN 643

  Fly   742 IDECGLELWFSVDFEVLGQIIHHELKENGEKERVTEENKEEYITLMTEWRMTRGIEQQTKTFLEG 806
            |:|||||::||||.|:||::..||||.:|...:||||||||||.|:.|||::||:|:||:.||||
Zfish   644 IEECGLEMFFSVDKEILGEVTTHELKPDGGNIQVTEENKEEYIRLVAEWRLSRGVEEQTQAFLEG 708

  Fly   807 FNEVVPLEWLKYFDERELELILCGMQDVDVEDWQRNTIYRHYNRNSKQVVWFWQFVRETDNEKRA 871
            ||:|:|.::|:|||.:|||::|||||::|:.|||||:|||||.|:|||:|||||||:|.|||||.
Zfish   709 FNDVLPQQYLQYFDAKELEVMLCGMQEIDLGDWQRNSIYRHYARSSKQIVWFWQFVKEMDNEKRM 773

  Fly   872 RLLQFVTGTCRVPVGGFAELMGSNGPQRFCIEKVGKETWLPRSHTCFNRLDLPPYKSYDQLVEKL 936
            |||||||||||:||||||:||||||||:|||||||||.||||||||||||||||||||:||.|||
Zfish   774 RLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKL 838

  Fly   937 TFAIEETEGFCQE 949
            .|||||||||.||
Zfish   839 LFAIEETEGFGQE 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(dx)NP_476753.1 C2_E3_ubiquitin_ligase 48..173 CDD:175988 43/125 (34%)
WW 364..396 CDD:197736 20/31 (65%)
HUL4 <395..946 CDD:227354 369/557 (66%)
itchaNP_001274024.1 C2_E3_ubiquitin_ligase 2..125 CDD:175988 43/125 (34%)
WW 276..305 CDD:459800 18/28 (64%)
HUL4 <307..851 CDD:227354 371/559 (66%)

Return to query results.
Submit another query.