DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4238 and UPL2

DIOPT Version :9

Sequence 1:NP_001259896.1 Gene:CG4238 / 33377 FlyBaseID:FBgn0031384 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_177189.1 Gene:UPL2 / 843368 AraportID:AT1G70320 Length:3658 Species:Arabidopsis thaliana


Alignment Length:1148 Identity:292/1148 - (25%)
Similarity:437/1148 - (38%) Gaps:379/1148 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 DPERLPELPP------LDEQRLQR------------------AAL--HLQQKLIL---------- 112
            |||.|..|||      |.:||.||                  |.|  .|:::::|          
plant  2632 DPEFLAALPPEIQREVLAQQRAQRMLQQSQGQPVDMDNASIIATLPADLREEVLLTSSEAVLAAL 2696

  Fly   113 -------REWLKDHRLQHHYQRLLAVEVASLEDVYWLEDSRASKILGKDWQL----------WSG 160
                   .:.|:|..::|:..|                    |::.|...:|          .:|
plant  2697 PPPLLAEAQMLRDRAMRHYQAR--------------------SRVFGSSHRLNNRRNGLGYRLTG 2741

  Fly   161 ARQNLPTSKAQ------LDALKAQLWSTVVKSSQHQDAWTWGGMLVVSVSVAGLVTLAAMTQP-- 217
            ..:.:..:..|      .|.||       ||..:       |..||.:.::..|:.|..:.||  
plant  2742 MERGVGVTIGQRDVSSSADGLK-------VKEIE-------GDPLVNADALKSLIRLLRLAQPLG 2792

  Fly   218 ---------SLAPEA--RHSLLQYVTGKY-----LLPANCKVQWDWKDPASVGGTMCFVV--RFF 264
                     :|...:  |.:|:|.:....     .||:...:    .:|..:.|....||  |..
plant  2793 KGLLQRLLLNLCAHSFTRANLVQLLLDMIRPEMETLPSELAL----TNPQRLYGCQLNVVYGRSQ 2853

  Fly   265 QRNGQPYPICDTDHFFVEVTEGTRKVVT----------------ISELGS---------STDPNN 304
            ..||.| |:     .|..|.|....:.|                :|:|.|         .||..:
plant  2854 LLNGLP-PL-----VFRRVLEVLTYLATNHSAVADMLFYFDSSLLSQLSSRKGKEKVTHETDSRD 2912

  Fly   305 ANIAKVKF------------TVRTA---GQYKISVLIGASHIAG-SPFLRSFLPGAID------- 346
            ..|..|.|            |...|   |..::.|...||.|.| ||  .|.:|..::       
plant  2913 LEIPLVVFLKLLNRPQLLQSTSHLALVMGLLQVVVYTAASRIEGWSP--SSGVPEKLENKPVGEE 2975

  Fly   347 ---------------ARRSRFIRPASTVICCAGAPTLMHIEPRDEFGNSCLFDQNQSDEALQGYQ 396
                           |||..          ||....:....|:.:..|.|:         |.||:
plant  2976 ASSETQKDAESELSVARRKN----------CAELYNIFLQLPQSDLCNLCM---------LLGYE 3021

  Fly   397 ---VAIYDLHGVPVEKL-----QHAIVFAYD-------------KVNSRVSVTALFPEPTCLRAV 440
               ..||.|.|..::||     .|...|..:             :|.:.:|.|....:.||..|.
plant  3022 GLSDKIYSLAGEVLKKLAAVDVTHRKFFTKELSELASGLSSSTVRVLATLSTTQKMSQNTCSMAG 3086

  Fly   441 IS-YRDQQLPNGDFDIIVLSSSDTTLVHKNIASRKHNICYEAKLLS------------------- 485
            .| .|..|         ||||..:|:...|:.:.|.....|..::.                   
plant  3087 ASILRVLQ---------VLSSLTSTIDDSNVGTDKETDQEEQNIMQGLKVALEPLWQELGQCISM 3142

  Fly   486 -------------------IFGVSKNKPRKVLCYVGPKQNSLIFQVTIKEMILKFIPKRIATFRL 531
                               :.|:|....      :.|...||             :|...|.|.|
plant  3143 TELQLDHTAATSNVNPGDHVLGISPTSS------LSPGTQSL-------------LPLIEAFFVL 3188

  Fly   532 CPSTKFHFLPQLVSQ-------------LHG--PVFIID-----DGAQPKIELASKDRNIIAATF 576
            |...:   .|.::.|             .||  ...|:|     ||:....:...|.|.::    
plant  3189 CEKIQ---TPSMLQQDATVTAGEVKESSTHGSSSKTIVDSQKKIDGSVTFSKFVEKHRRLL---- 3246

  Fly   577 THFLLKNIGGSE-------------TFKDKQDFFYHEVRKFHASYYHEKMALKVQREKILESSMK 628
            ..|:.:|....|             .|.:|:.:|...:|..|..:....:.:.|:|..:||.|..
plant  3247 NSFVRQNPSLLEKSFSMMLKAPRLIDFDNKKAYFRSRIRHQHDQHISGPLRISVRRAYVLEDSYN 3311

  Fly   629 AVKGFSVSDWCGNFEVTFQGEQGIDWGGLRREWFELVCSALFDARGGLFCTFHDKHQALVHPNPT 693
            .::..|..|..|...|.||||:|||.|||.|||::|:...:||....||.|.  .:.|...|||.
plant  3312 QLRMRSPQDLKGRLNVQFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTV--GNDATFQPNPN 3374

  Fly   694 ---RPAHLKLKHFEFAGKMVGKCLFESALGGTYRQLVRARFSRSFLAQLIGLRVHYKYFEQDDPD 755
               :..|  |.:|:|.|:||.|.||:.       ||:...|:|||...::|::|.|...|..|||
plant  3375 SVYQTEH--LSYFKFVGRMVAKALFDG-------QLLDVYFTRSFYKHILGVKVTYHDIEAVDPD 3430

  Fly   756 LYLSKIKYILDTDLDATDTLELYFVEEMYDSSSGQLSKT----IELIPNGAKTRVTNATKNQYLD 816
             |...:|::|:.|:  :|.|:|.|..:..:.......||    .||.|.|...|||..||::|:|
plant  3431 -YYKNLKWLLENDV--SDILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVD 3492

  Fly   817 ALAQQRLCNNVKDEVDSFLKGLNSIIPDNLLSIFDENELELLMCGTGEYSISDFKAHHIANGNSA 881
            .:|...|.:.::.::::||:|||.:||..|:|||::.|||||:.|..|....|.||       :.
plant  3493 LVADHILTSAIRPQINAFLEGLNELIPRELVSIFNDKELELLISGLPEIDFDDLKA-------NT 3550

  Fly   882 EFRR------VLAWFWAGVSNFSQTEMARLLQFTTGCSQLPPGGFQEL----NPQ-FQITAAPTF 935
            |:..      |:.|||..|..||:.:|||.|||.||.|::|..||:.|    .|| .||..|  :
plant  3551 EYTSYTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKA--Y 3613

  Fly   936 GN---LPTAHTCFNQLCLPDYESYEQFEKSLLLAISEGSEGFG 975
            |:   ||:||||||||.||:|:|.||.::.|||||.|.:||||
plant  3614 GSPERLPSAHTCFNQLDLPEYQSKEQVQERLLLAIHEANEGFG 3656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4238NP_001259896.1 IG_FLMN 238..336 CDD:214720 31/140 (22%)
Filamin 238..336 CDD:279024 31/140 (22%)
HECTc 615..975 CDD:238033 150/380 (39%)
HECTc 642..974 CDD:214523 141/352 (40%)
UPL2NP_177189.1 DUF908 88..358 CDD:283630
DUF913 416..765 CDD:283642
UBA_atUPL1_2_like 1275..1312 CDD:270512
DUF4414 2593..2688 CDD:291075 16/55 (29%)
HECTc 3296..3656 CDD:238033 150/382 (39%)
HECTc 3320..3655 CDD:214523 143/357 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11254
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.870

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