DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4238 and ube3b

DIOPT Version :9

Sequence 1:NP_001259896.1 Gene:CG4238 / 33377 FlyBaseID:FBgn0031384 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_001072875.1 Gene:ube3b / 780337 XenbaseID:XB-GENE-1010563 Length:1072 Species:Xenopus tropicalis


Alignment Length:630 Identity:164/630 - (26%)
Similarity:251/630 - (39%) Gaps:156/630 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   419 DKVNSR--VSVTALFPEPTCLRAVISYRD------QQLPNGDFDIIVLSSSDTTLVHKNI----- 470
            |...||  :::..||.:  |.|.:|:..|      :|:.....:::.:||...:.|.|.|     
 Frog   522 DTEESRRLLAMLVLFCD--CSRHLITILDDIEVYEEQISFKLEELVTISSFLNSFVFKMIWDGLL 584

  Fly   471 ASRK-------HN------ICYEAKLLSIFGVSKNKPRKVLCYVGPKQNSLIFQVTIKE-----M 517
            .:.|       |:      :.||......|....:..||.|      :.:|:||...||     :
 Frog   585 ENAKGETLELFHSVHGWLMVLYERDCRRRFAPEDHWLRKDL------KPTLLFQELDKERKRAQL 643

  Fly   518 ILKFIPKRIATFRLCPSTKFHFLPQLVSQLHGPVFIIDDGAQPKIELASKDRNIIAATFTHFLLK 582
            :|::||              |.:|.                        |:|.:        |.:
 Frog   644 LLQYIP--------------HVIPH------------------------KNRVL--------LFR 662

  Fly   583 NIGGSETFKDKQDFFYHEVRKFHASYYHEKMALKVQREKILESSMKAVKGFSVSDWCGNFEVTFQ 647
            ||...|  |:|...........|.::      :.::|.::||.....::..|.:...|...|.|.
 Frog   663 NIVTKE--KEKLGLVETNTASPHVTH------ITIRRSRMLEDGYDQLRQLSQNAMKGVIRVKFV 719

  Fly   648 G-----EQGIDWGGLRREWFELVCSALFDARGGLFCTFHDKHQALVHPNPTRPAHLK-LKHFEFA 706
            .     |.|||..|:.:|:.|.:...:||....||.|.....:  ::|:||...|.. |:.|||.
 Frog   720 NDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSSGDR--LYPSPTSYIHENYLQLFEFV 782

  Fly   707 GKMVGKCLFESALGGTYRQLVRARFSRSFLAQLIGLRVHYKYFEQD-------DPDLY--LSKIK 762
            |||:||.::|..       :|...|:..||:||:|  .|:..|...       |.:.|  |:.||
 Frog   783 GKMLGKAVYEGI-------VVDVPFASFFLSQLLG--HHHSIFYSSVDELPSLDSEFYKNLTSIK 838

  Fly   763 YILDTDLDATDT-LELYFVEEMYDSSSGQLSKTIELIPNGAKTRVTNATKNQYLDALAQQRLCNN 826
            ..   |.|.:|. |.|.:.|::    .||| ...||:|.|....|||..|..|:..:|..|:...
 Frog   839 RY---DGDISDLGLTLSYDEDV----MGQL-VCHELVPGGKSIPVTNENKISYIHLMAHFRMHTQ 895

  Fly   827 VKDEVDSFLKGLNSIIPDNLLSIFDENELELLMCG-TGEYSISDFKAHHIANGNSAEFRRVLAWF 890
            :|::..:|:.|..|||....:.:|...||:.|:.| ..|..:.|.|.|.:..|......||:.|.
 Frog   896 IKNQTVAFISGFRSIIRPEWIRMFSAPELQRLISGDNAEIDLDDLKKHTVYYGGFHGSHRVIIWL 960

  Fly   891 WAGVSN-FSQTEMARLLQFTTGCSQLPPGGFQELNPQFQITAAPTF------------------- 935
            |..::| ||..|.|..|:|.|.||:.|..||..|.|.|.|......                   
 Frog   961 WDILANDFSSEEKAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTI 1025

  Fly   936 ------GNLPTAHTCFNQLCLPDYESYEQFEKSLLLAISEGSEGF 974
                  |.|||:.||||.|.||:|.......:.|..|||..: ||
 Frog  1026 RKKEPGGRLPTSSTCFNLLKLPNYSKKGILREKLRYAISMNT-GF 1069

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4238NP_001259896.1 IG_FLMN 238..336 CDD:214720
Filamin 238..336 CDD:279024
HECTc 615..975 CDD:238033 122/403 (30%)
HECTc 642..974 CDD:214523 115/374 (31%)
ube3bNP_001072875.1 IQ 28..50 CDD:197470
HECTc 686..1070 CDD:238033 122/410 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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