DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4238 and Ubr5

DIOPT Version :9

Sequence 1:NP_001259896.1 Gene:CG4238 / 33377 FlyBaseID:FBgn0031384 Length:977 Species:Drosophila melanogaster
Sequence 2:XP_006520242.1 Gene:Ubr5 / 70790 MGIID:1918040 Length:2800 Species:Mus musculus


Alignment Length:1179 Identity:220/1179 - (18%)
Similarity:366/1179 - (31%) Gaps:472/1179 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 KTFPT----------LKVKLCFGESMGISSLSSCGDPERLPELPPLDEQRLQRAALHLQQKLILR 113
            |..||          .:.:|.:|     |:|:|.|||.. |..|           ||..|....|
Mouse  1834 KLIPTWNWMVSVMDSTEAQLRYG-----SALASAGDPGH-PNHP-----------LHASQNSARR 1881

  Fly   114 EWLKDHRLQHHYQRLLAVEVASLEDVYWLEDSRASKILGKDWQLWSGARQNLPTSKAQLDALKAQ 178
            |            |:.|.|.|||..   ||..|.:.:|        .|||.:.:::.  |.|...
Mouse  1882 E------------RMTAREEASLRT---LEGRRRATLL--------SARQGMMSARG--DFLNYA 1921

  Fly   179 LWSTVVKSSQHQDAWTWGGML-------VVSVSVAGLVTLAAMTQ------PSLAPEARHSLLQY 230
            |......:.:|.|...   :|       |..|..|.:..:.||.|      |.|..:....||:.
Mouse  1922 LSLMRSHNDEHSDVLP---VLDVCSLKHVAYVFQALIYWIKAMNQQTTLDTPQLERKRTRELLEL 1983

  Fly   231 VTGKYLLPANCKVQWDWKDPASVGGTMCFVVRFFQRNGQPYPICDTDHFFVEVTEGTRKVVTISE 295
            .....                                       |::|   |..:.|.:..|:::
Mouse  1984 GIDNE---------------------------------------DSEH---ENDDDTSQSATLND 2006

  Fly   296 LGSSTDPNNANIAKVKFTVRTAGQYKISVLIGASHIAGSPFLR-----SFLPGAIDARRSRFIRP 355
            ....:.|...                     |.:|    ||.|     :|| |.|..  :.|..|
Mouse  2007 KDDDSLPAET---------------------GQNH----PFFRRSDSMTFL-GCIPP--NPFEVP 2043

  Fly   356 ASTVICCAGAPTLMHIEPRDEFGNSCLFDQNQSDEALQGYQVAIYDLHGVPVEKLQHAIVFAYDK 420
            .:..|..|..|.|:....|.|                        ||.|.|.:.|..:      .
Mouse  2044 LAEAIPLADQPHLLQPNARKE------------------------DLFGRPSQGLYSS------S 2078

  Fly   421 VNSRVSVTALFPEPTC-------------LRAVISYRDQQLPNGDFDIIVLSSSDTTL---VHKN 469
            ..|...:..:..:..|             |:.|::.:::|...|:...::...:|::.   ...:
Mouse  2079 AGSGKCIVEVTMDRNCLEVLPTKMSYAANLKNVMNMQNRQKKEGEEQSLLAEEADSSKPGPSAPD 2143

  Fly   470 IASRKHNICYEAKLLSIFGVSKNKPRKVLCYVGPKQNSLIFQVTIKEMILKFIPKRIATFRLCPS 534
            :|::     .::.||:..|:::::        ||...|...|.:...|::.. ...:..:||.  
Mouse  2144 VAAQ-----LKSSLLAEIGLTESE--------GPPLTSFRPQCSFMGMVISH-DMLLGRWRLS-- 2192

  Fly   535 TKFHFLPQLVSQLHGPVFIIDDGAQPKIELASKDRNIIAATFTHFLLKNIGGSETFKDKQDFFYH 599
                      .:|.|.||:.|.||:|                 ..:|..:||   |:.|:..|..
Mouse  2193 ----------LELFGRVFMEDVGAEP-----------------GSILTELGG---FEVKESKFRR 2227

  Fly   600 EVRKFHASYYHE-KMALKVQREK--ILESSMKAVKGFSVSDWCG-------NFEVTFQGEQGIDW 654
            |:.|.......: .:.:||.|::  :::.:|:.:.. .....|.       ..:|||:.|.| :.
Mouse  2228 EMEKLRNQQSRDLSLEVKVDRDRDLLIQQTMRQLNN-HFGRRCATTPMAVHRVKVTFKDEPG-EG 2290

  Fly   655 GGLRREWFELVCSALFD----------------------------------------------AR 673
            .|:.|.::..:..|...                                              .|
Mouse  2291 SGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQRLRNRGERDREREREREMRRSSGLR 2355

  Fly   674 GG--------------------------------------------------------------- 675
            .|                                                               
Mouse  2356 AGSRRDRDRDFRRQLSIDTRPFRPASEGNPSDDPDPLPAHRQALGERLYPRVQAMQPAFASKITG 2420

  Fly   676 -----------LFCTFHDKHQALVH---------------------------------------- 689
                       |.....|..:|.|.                                        
Mouse  2421 MLLELSPAQLLLLLASEDSLRARVDEAMELIIAHGRENGADSILDLGLLDSSEKVQENRKRHGSS 2485

  Fly   690 -------------------------------PNPTRPAHLKLKHFEFAGKMVGKCLFESALGGTY 723
                                           |.|.:....:|..|...|:::|.||.::      
Mouse  2486 RSVVDMDLEDTDDGDDNAPLFYQPGKRGFYTPRPGKNTEARLNCFRNIGRILGLCLLQN------ 2544

  Fly   724 RQLVRARFSRSFLAQLIGLRVHYKYFEQDDPDLYLSKIKYIL---DTDLDAT-DTLELYF-VEEM 783
             :|.....:|..:..|:|.:|::..|...||.:|.|..:.||   .:|.||. ..::|.| ::..
Mouse  2545 -ELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAIDLC 2608

  Fly   784 YDSSSGQLSKTIELIPNGAKTRVTNATKNQYLDALAQQRLCNNVKDEVDSFLKGLNSIIPDNLLS 848
            .:...||    :||||||....||.....:|:...|:.|:....:..:.:..|||..::|.|.|.
Mouse  2609 KEEGGGQ----VELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLE 2669

  Fly   849 IFDENELELLMCGTGEYSIS---DFKAHHIANGNSAE----FRRVLAWFWAGVSNFSQTEMARLL 906
            .....:..||:.|.||.::.   .|.:.:..:|.:||    |:|   |||:.|...|.||...|:
Mouse  2670 DLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR---WFWSIVEKMSMTERQDLV 2731

  Fly   907 QFTTGCSQLPPG--GFQELNPQFQITAAPTFG-NLPTAHTCFNQLCLPDYESYEQFEKSLLLAIS 968
            .|.|....||..  |||   |...||..|... :||||:||.::|.:|.|.|.:..::.|||||.
Mouse  2732 YFWTSSPSLPASEEGFQ---PMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIK 2793

  Fly   969 EGSEGFGMV 977
              ::.||.|
Mouse  2794 --TKNFGFV 2800

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4238NP_001259896.1 IG_FLMN 238..336 CDD:214720 8/97 (8%)
Filamin 238..336 CDD:279024 8/97 (8%)
HECTc 615..975 CDD:238033 108/574 (19%)
HECTc 642..974 CDD:214523 103/537 (19%)
Ubr5XP_006520242.1 CUE_UBR5 184..230 CDD:270606
ZnF_UBR1 1177..1244 CDD:197698
PolyA 2391..2454 CDD:197769 4/62 (6%)
HECTc 2469..2797 CDD:214523 89/346 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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