DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4238 and wwc3

DIOPT Version :9

Sequence 1:NP_001259896.1 Gene:CG4238 / 33377 FlyBaseID:FBgn0031384 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_001103940.1 Gene:wwc3 / 566492 ZFINID:ZDB-GENE-070209-229 Length:1148 Species:Danio rerio


Alignment Length:600 Identity:112/600 - (18%)
Similarity:207/600 - (34%) Gaps:171/600 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   371 IEPRDEFGNSCLFDQNQSDEALQGYQVAIYDLH-GV----------PVEK------------LQH 412
            |:|||.......|.....||...|::| :||.. ||          .:|.            |:.
Zfish    44 IDPRDRITKPLTFADCVGDELPLGWEV-VYDQQVGVYYIDHINKTTQIENPRTQWRQEQERMLKE 107

  Fly   413 AIVFAYDKVNSRVSVTALFPEPTCLRAVISYRDQQLPNGDFDIIVLSSSDTTLVHKNIASRKHNI 477
            .:|.|.:.:|::..:..:..:    |..::.::.||.|      .|:..|    :::|.| .|: 
Zfish   108 YLVVAQEALNAKKEMYQIKQQ----RLELAQQEMQLFN------QLTQDD----NRSITS-SHS- 156

  Fly   478 CYEAKLLSIFGVSKNKPRKVLCYVGPKQNSLIFQVTIKEMILKFIPKRIATFRLCPSTKFHFLPQ 542
                      |.|.|                          .|:.|.:|.....|...:...|.|
Zfish   157 ----------GSSSN--------------------------AKYDPDQIKAEIACRRERLSRLKQ 185

  Fly   543 LVSQLHGPVFIIDDGAQPKIELASKDRNIIAATFTHFLLKNIGGSETFKDKQDFFYHEVRKFHAS 607
            .::|:...:...:.|.:...|:..|    ::::.|::.|          |:....:.|:|..   
Zfish   186 ELAQMRQELQYKEMGVETLQEIDRK----MSSSQTNYKL----------DEAQAIFSELRSI--- 233

  Fly   608 YYHEKMALKV---QREKILESSMKAVKGFSVSDWCGNF-EVTFQGEQGIDWGGLRREWFELVCSA 668
                |.|:..   :|:.:::|..|....|     |.:. |||...|...|...: :::.:..|..
Zfish   234 ----KKAISTGEKERQDLIQSLAKLTLNF-----CDSINEVTNNAESLADSCSV-QQYTDAGCQT 288

  Fly   669 LFDARGGLFCTFHDKHQALVHPNPTRPAHLKLK-HFEFAGKMVGKCLFESALGGTYRQLVRARFS 732
              |..|    .|..:..:|:      ...:||. .:|.|.|.:.....:.|...:.....||...
Zfish   289 --DLMG----EFGSQESSLL------ADRVKLSWQYEEAKKKMSSIQHQLAQLDSESWSGRAEAD 341

  Fly   733 RSF-LAQLIGLRVHYKYFEQDDPDLYLSKIKYILDTDLDATDTLELYFVEE---MYDSSSGQLSK 793
            |.: ..||:           .:.:..|.::. :|.....::||| |...||   :.|    ::.:
Zfish   342 RDWDCLQLL-----------REKETLLQELT-LLSQQQHSSDTL-LQLQEEKRRLQD----EVQR 389

  Fly   794 TIELIPNGAKTRVTNATKNQYLDALAQQRLCNNVKDEVDSFLKGLNSIIPDNLLSIFDENELELL 858
            .......||..|:....|...|  :.|......:...:.|.||.|::   .||            
Zfish   390 AHSAQSQGANQRILLQEKRNVL--MRQLEEATRITTYLHSQLKSLSA---SNL------------ 437

  Fly   859 MCGTGEYSISDFKAHHIANGNSAEFRRVLAWFWAGVSNFSQTEMARLLQF--TTGCSQLPPGGFQ 921
                   ::|...    :.|:.|..|..||.....:|:.|.|::..|.|:  |.|.|.:....|:
Zfish   438 -------TVSSSS----SRGSLASSRGSLASSRGSLSSVSFTDIYGLPQYDRTEGSSDVLDPSFR 491

  Fly   922 ELNPQFQITAAPTFG 936
            .|.|....::...:|
Zfish   492 YLLPLESHSSGSAYG 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4238NP_001259896.1 IG_FLMN 238..336 CDD:214720
Filamin 238..336 CDD:279024
HECTc 615..975 CDD:238033 64/332 (19%)
HECTc 642..974 CDD:214523 59/302 (20%)
wwc3NP_001103940.1 WW 17..46 CDD:278809 1/1 (100%)
WW 64..93 CDD:278809 7/29 (24%)
C2_Kibra 677..800 CDD:176062
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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