DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4238 and trip12

DIOPT Version :9

Sequence 1:NP_001259896.1 Gene:CG4238 / 33377 FlyBaseID:FBgn0031384 Length:977 Species:Drosophila melanogaster
Sequence 2:XP_005159283.1 Gene:trip12 / 564866 ZFINID:ZDB-GENE-041111-262 Length:2096 Species:Danio rerio


Alignment Length:424 Identity:108/424 - (25%)
Similarity:169/424 - (39%) Gaps:92/424 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   617 VQREKILESSMKAVKGFSVSDWCGNFEVTFQGEQGIDWGGLRREWFELVCSALFDARGGLFCTFH 681
            :.|:::|:.:...::....|.  ...|:.::.|.|...|. .:|::.||...|..|..||:    
Zfish  1696 INRDELLKQAESVMQDLGSSR--AMLEIQYENEVGTGLGP-TQEFYALVSQELQRADLGLW---- 1753

  Fly   682 DKHQALVHPNP-------------------------TRPAHL-KLK-HFEFAGKMVGKC-----L 714
             :.:.:...||                         |:|||: |:| .|.|.||::.|.     |
Zfish  1754 -RGEEVTLSNPKVGSQEGTKYMFSSRGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRL 1817

  Fly   715 FESALG-GTYRQLVRARFSRS----------------FLAQLIGLRVHYKYFEQDDPDLYLSKIK 762
            .:..|| ..|:.::|...|.|                .|..:|..:   |..|||.        .
Zfish  1818 LDLPLGLPFYKWMLRHESSISSHDLVNIDPGVAKSIQHLEDIIRQK---KRIEQDR--------S 1871

  Fly   763 YILDTDLDATDTLEL--YFVEEMYDSSSGQLSKTIELIPNGAKTRVTNATKNQYLDALAQQRLCN 825
            :..:|...|.::|.:  ..||::....:......|||...|....||......||..:....|..
Zfish  1872 HTRETLQQALESLNMNGCSVEDLGLDFTLPGFPNIELKKGGKDVPVTIHNLEDYLRLVVYWTLNE 1936

  Fly   826 NVKDEVDSFLKGLNSIIPDNLLSIFDENELELLMCGTGEYSISDFKA--------HHIANGNSAE 882
            .|..:.:||.:|..|:.|.:.|..|...||:.|:||:...| .|.|.        |...:.:   
Zfish  1937 GVLRQFESFREGFESVFPLHHLQYFYPEELDQLLCGSKSES-WDVKTLMECCRPDHGYTHDS--- 1997

  Fly   883 FRRVLAWFWAGVSNFSQTEMARLLQFTTGCSQLPPGGFQELNPQFQITAAPTFGN-------LPT 940
              |.:.:.:..:|:|...:....|||.||..:||.|||:.|||...| ...||.:       ||:
Zfish  1998 --RAVRFLFEVLSSFDAEQQRLFLQFVTGSPRLPVGGFRSLNPPLTI-VRKTFESTENPDDFLPS 2059

  Fly   941 AHTCFNQLCLPDYESYEQFEKSLLLAISEGSEGF 974
            ..||.|.|.||||.|.|...:.||:|..||.:.|
Zfish  2060 VMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSF 2093

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4238NP_001259896.1 IG_FLMN 238..336 CDD:214720
Filamin 238..336 CDD:279024
HECTc 615..975 CDD:238033 108/424 (25%)
HECTc 642..974 CDD:214523 104/397 (26%)
trip12XP_005159283.1 WWE 842..907 CDD:280915
HECTc 1693..2094 CDD:238033 108/424 (25%)
HECTc 1711..2090 CDD:214523 104/404 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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