DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4238 and ube3a

DIOPT Version :9

Sequence 1:NP_001259896.1 Gene:CG4238 / 33377 FlyBaseID:FBgn0031384 Length:977 Species:Drosophila melanogaster
Sequence 2:XP_012812141.1 Gene:ube3a / 407881 XenbaseID:XB-GENE-948557 Length:908 Species:Xenopus tropicalis


Alignment Length:578 Identity:135/578 - (23%)
Similarity:256/578 - (44%) Gaps:93/578 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   440 VIS--YRDQQLPNGDFDIIVLSSSDTTLVHKNIASRK----HN---------ICYEAKLLSIFGV 489
            |||  :..:.|.|.|..|:..:.....:.:.|:...:    ||         ...|..|..:.|.
 Frog   384 VISNEFNSRNLVNDDDAIVAATKCLKMVYYSNVVGGEIETDHNEEEDDEPVPESSELTLQELLGE 448

  Fly   490 SKNKPRKVLCYVGPKQNSLIFQVTIKEMILKFIPKRIATFRLCPSTKFHFLPQLVSQLHGPVFII 554
            .:...:      ||:.:.|..::.:|.:..:   |.:..|.           :.|::....|..:
 Frog   449 ERRNKK------GPRVDPLETELGVKSIDCR---KPLIPFE-----------EFVNEPLNDVLEM 493

  Fly   555 D-DGAQPKIELASKDRNIIAATFTHFLLKNIGGSETFKDKQDFFYHEVRKFHASY-------YHE 611
            | |....|:|..:|...:......:.:.||:|   .:.|.:...|.| |:....|       .:.
 Frog   494 DKDYTFFKVETENKFSFMTCPFILNAVTKNLG---LYYDNRIRMYSE-RRITVLYSLVQGQQLNP 554

  Fly   612 KMALKVQREKILESSMKAVKGFSV---SDWCGNFEVTFQGEQGIDWGGLRREWFELVCSALFDAR 673
            .:.|||:|:.|::.::..::..::   :|......|.|:||||:|.||:.:|:|:||...:|:..
 Frog   555 YLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPD 619

  Fly   674 GGLFCTFHD--KHQALVHPNPTRPAHLKLK-HFEFAGKMVGKCLFESALGGTYRQLVRARFSRSF 735
            .|:| |:.:  ||...      .|:..:.: .|...|.::|..::.:.:...:..:|..|     
 Frog   620 IGMF-TYDESTKHSWF------NPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYR----- 672

  Fly   736 LAQLIGLRVHYKYFEQDDPDLYLSKIKYILDTDLDATDTLELYFVEEMYDSSSGQLSKT------ 794
              :|:|.:..::......|.||.| :|.:|:.:.:..:.:.:.|          |:|:|      
 Frog   673 --KLMGKKGTFRDLADSHPVLYQS-LKELLEYEGNVEEDMMMTF----------QISQTDLFGNP 724

  Fly   795 --IELIPNGAKTRVTNATKNQYLDALAQQRLCNNVKDEVDSFLKGLNSIIPDNLLS-IFDENELE 856
              .:|..||.|..:||..:.:::.......|..:|:.:..:|.:|.:.:..::.|. :|...|:|
 Frog   725 LMHDLKENGDKIPITNENRKEFVSLYTDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIE 789

  Fly   857 LLMCGTGEYSISDFKAHHIANGNSAEFRRVLAWFWAGVSNFSQTEMARLLQFTTGCSQLPPGGFQ 921
            ||:||:........|.....:|.......::..||..|::|::.:....||||||..:.|.||..
 Frog   790 LLICGSRNLDFQALKDTTEYDGGYTRDSNIIKEFWEIVNSFTEEQKRLFLQFTTGTDRAPVGGLG 854

  Fly   922 ELNPQFQITA--APTFGNLPTAHTCFNQLCLPDYESYEQFEKSLLLAISEGSEGFGMV 977
            :|.   .|.|  .|....|||:|||||.|.||:|.:.|:.::.||.||:. ::||||:
 Frog   855 KLK---MIIAKNGPDTDRLPTSHTCFNVLLLPEYSNKEKLKERLLKAITY-AKGFGML 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4238NP_001259896.1 IG_FLMN 238..336 CDD:214720
Filamin 238..336 CDD:279024
HECTc 615..975 CDD:238033 98/376 (26%)
HECTc 642..974 CDD:214523 91/345 (26%)
ube3aXP_012812141.1 AZUL 58..112 CDD:374628
HECTc 556..906 CDD:238033 98/378 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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