DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4238 and Ube3a

DIOPT Version :9

Sequence 1:NP_001259896.1 Gene:CG4238 / 33377 FlyBaseID:FBgn0031384 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_648452.1 Gene:Ube3a / 39266 FlyBaseID:FBgn0061469 Length:973 Species:Drosophila melanogaster


Alignment Length:1112 Identity:223/1112 - (20%)
Similarity:388/1112 - (34%) Gaps:337/1112 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 NVGGVMHAATGGKTFPTLK-------VKLCFGESMGISSLSSCGDPE-------RLPELPPLDEQ 97
            :..|....|.||:..|.:|       :|..|.:..     |.||:..       ...::.|:...
  Fly    18 SASGSAAGAVGGRATPEMKRSAVRSLIKRYFHQLQ-----SGCGNANCSNANCASSGKVAPMTPN 77

  Fly    98 RLQRAALHLQQKLILREWLKDHRLQHHYQRLLAVEVASLEDVYWL--EDSRASKILGKDWQLWSG 160
            .:...||.|        :.:|.:|...:    ..|..|.:||..|  .||.:|.         ||
  Fly    78 EVAARALQL--------FSQDAQLCEAF----TSEANSPQDVDMLSPNDSSSSS---------SG 121

  Fly   161 ARQNLPTSKAQLDALKAQLWSTVVKSSQHQDAWTWGGMLVVSVS------------VAGLVTLAA 213
            :..:..||        |...:|..:.||...|     .:||.||            :||....:.
  Fly   122 SSTSTITS--------ASTTTTTSRQSQSTPA-----AVVVPVSSPYLTQSVPQLDIAGAEHSSG 173

  Fly   214 MTQ---PSLAPEARHSLLQYVTGKYLLPANCKVQWDWKDPASVGGTMCFVVRFFQRNGQPYPICD 275
            .::   |:|||.  ||          |.||..:..                         |..|.
  Fly   174 DSEPCTPTLAPV--HS----------LDANSLIAL-------------------------YEQCR 201

  Fly   276 TDHFFVEVTEGTRKVV-TISELGSSTDPNNANIAKVKFTVRTAGQYKISVLIGASHIAGSPFLRS 339
            ....:..:......|. ::..||.|                         .|.::..|.|..|:.
  Fly   202 AADSYDRICHAIGVVFSSVDRLGKS-------------------------FIRSAEPAASSSLQE 241

  Fly   340 FL---PGAIDARRSRFI----------------RPASTVICCAGAPTL-MHIEPRDEFGNSCLFD 384
            .|   |||::..:.|.:                :..|.....|.|.:: ...||.:|..:.|   
  Fly   242 LLANSPGALNKEQLRTLEGEHDKDEDSTQQVDEQSESAANATATAESVESEAEPEEEDDDVC--- 303

  Fly   385 QNQSDEALQ-------------GYQV---------AIYDLHGVPV------EKLQHAIVFAYD-K 420
            .:||.:.|.             |.|:         ::..|....:      |::.|.:|..:| .
  Fly   304 SSQSSDTLVDLPGLRRVQRLLFGCQIRAITEKLTSSVIQLSDWVIYMRTDWERVIHCLVICFDLA 368

  Fly   421 VNSRVSVTALFPEPTCLRAVISYRDQQLPNGDFDIIVLSSSDTTLVHKNIA--------SRKHNI 477
            .|:..||..:           .|.|:.||.    :...:|:........:|        .:.|::
  Fly   369 TNTNNSVVDM-----------DYLDRVLPK----LCQAASAMPVPAQARLARIWAAHCSDQLHSL 418

  Fly   478 ---CYEAKLLSIFGVSKNKPRKVLCYVGPKQNSLIFQVTIKEMILKFIPKRIATFRLCPSTKFH- 538
               |.:...|.:          :|.....::|..|..|| |.:.:.|....:|:....||.:.. 
  Fly   419 IAACQQQITLQV----------LLDEESMRENESIISVT-KVLKIVFYANILASELERPSCRVPL 472

  Fly   539 -------------------FLPQLVSQLHGPVFIID-----------DGAQPKI----------- 562
                               |:...:.:.|.|.|..|           |..:|.|           
  Fly   473 EDRTEAATASGSAAVEDDLFVYNSLLEPHMPKFAEDQFEKELQVSAIDCRKPLIPLEEFYNEALS 537

  Fly   563 -------------------ELASKDRNIIAATFTHFLLKNIGGSETFKDKQDFFYHEVR-KFHAS 607
                               |:.|...|..:.....|:|       |...|.|..|::.| :.::.
  Fly   538 ENIQMHHDYLSYKTLAMESEIGSGHANYFSFMLYAFIL-------TPSTKVDALYYDSRMRMYSE 595

  Fly   608 YY-------------------HEKMALKVQREKILESSMKAVKGFSVS---DWCGNFEVTFQGEQ 650
            .|                   ...:.|.|:|::::..::..::..::|   |......|.|.|||
  Fly   596 RYSSLHSILNNIGQVGQEDNPRPDLKLTVRRDQLINDALIGLEMVAMSNPKDLKKQLVVEFVGEQ 660

  Fly   651 GIDWGGLRREWFELVCSALFDARGGLFCTFHDKHQALVHPNPTRPAHLKLKHFEFAGKMVGKCLF 715
            |||.||:.:|:|:|:...:|:...|:|....:.:....:..|....    ..|...|.::|..::
  Fly   661 GIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMWFNATPFENG----AQFTLIGIIIGLAIY 721

  Fly   716 ESALGGTYRQLVRARFSRSFLAQLIGLRVHYKYFEQDDPDLYLSKIKYILDTDLDATDTLELYFV 780
            .:.       .:...|......:|||....:.......|.||.| :|.:|  |....|..|::  
  Fly   722 NNV-------TLAVNFPMVVYRKLIGYCGTFADLSDWSPALYKS-LKSML--DYQGQDMEEVF-- 774

  Fly   781 EEMYDSSSGQLSKTI---ELIPNGAKTRVTNATKNQYLDALAQQRLCNNVKDEVDSFLKGLNSII 842
            |:.:..|...:...:   ||:|||....|....|..:::..:...|..|::.:.::|.||...:.
  Fly   775 EQTFKISYSDVFGDVVQHELVPNGQDVLVGQHNKELFVNLYSDFLLNTNIEQQFNAFRKGFEMVT 839

  Fly   843 PDNLLS-IFDENELELLMCGTGEYSISDFKAHHIANGNSAEFRRVLAWFWAGVSNFSQTEMARLL 906
            .::.|. :|...|:|:|:||:.|:...:.:...:..|...|..:.:..||:.|......:..:||
  Fly   840 DESPLKLLFRPEEIEMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMPSEDKHKLL 904

  Fly   907 QFTTGCSQLPPGGFQELNPQFQITA-APTFGNLPTAHTCFNQLCLPDYESYEQFEKSLLLAISEG 970
            :||||.:::|.||.:.|  :..||. .|....|||:|||||.|.||:|.|.|:.|:.|:.||:. 
  Fly   905 EFTTGSARVPVGGLKCL--RLLITRHGPDSDRLPTSHTCFNVLLLPEYSSREKLEERLMKAINY- 966

  Fly   971 SEGFGMV 977
            |:||||:
  Fly   967 SKGFGML 973

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4238NP_001259896.1 IG_FLMN 238..336 CDD:214720 11/98 (11%)
Filamin 238..336 CDD:279024 11/98 (11%)
HECTc 615..975 CDD:238033 98/367 (27%)
HECTc 642..974 CDD:214523 92/336 (27%)
Ube3aNP_648452.1 AZUL 40..94 CDD:293166 10/66 (15%)
HECTc 620..971 CDD:238033 98/369 (27%)
HECTc 647..970 CDD:214523 93/341 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446945
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.