DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4238 and Hectd1

DIOPT Version :9

Sequence 1:NP_001259896.1 Gene:CG4238 / 33377 FlyBaseID:FBgn0031384 Length:977 Species:Drosophila melanogaster
Sequence 2:XP_006240148.1 Gene:Hectd1 / 362736 RGDID:1561653 Length:2610 Species:Rattus norvegicus


Alignment Length:638 Identity:135/638 - (21%)
Similarity:209/638 - (32%) Gaps:248/638 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   520 KFIPKRIATFRLCPSTKFHFLPQLVSQLHGPVFIIDDGAQPK--IELASKDRNIIAATFTHFLLK 582
            :|..|:|.|             :::.|:..|: .:..||.|.  .:|.||         ..||: 
  Rat  2035 EFTSKKITT-------------KILQQIEEPL-ALASGALPDWCEQLTSK---------CPFLI- 2075

  Fly   583 NIGGSETFKDKQDFFYHEVRKFHAS----YYHEKMALKVQREKILES-----------------S 626
                  .|:.:|  .|.....|.||    :...:....|:|.:...|                 .
  Rat  2076 ------PFETRQ--LYFTCTAFGASRAIVWLQNRREATVERTRTTSSVRRDDPGEFRVGRLKHER 2132

  Fly   627 MKAVKGFSVSDWCGN-----------FEVTFQGEQGIDWGGLRREWFELV-------------CS 667
            :|..:|.|:.:|..|           .||.|.||:|...|. ..|::.||             |.
  Rat  2133 VKVPRGESLMEWAENVMQIHADRKSVLEVEFLGEEGTGLGP-TLEFYALVAAEFQRTDLGTWLCD 2196

  Fly   668 ALF--------DARGGL---------FCTFHDKHQALVHPNPTRPAHLK--LKHFEFAGKMVGKC 713
            ..|        |..|||         .|..      ...|.|.....|:  .|.|.|.|..:.||
  Rat  2197 DNFPDDESRHVDLGGGLKPPGYYVQRSCGL------FTAPFPQDSDELERITKLFHFLGIFLAKC 2255

  Fly   714 LFESALGGTYRQLVRARFSRSF------------LAQLIGLRVHYKYFEQDDPDLYL-------- 758
            :.::       :||....|:.|            :::||       |..:.|.||:.        
  Rat  2256 IQDN-------RLVDLPISKPFFKLMCMGDIKSNMSKLI-------YESRGDRDLHCTESQSEAS 2306

  Fly   759 ----------------SKIKYILD----------------TDLDATDTLELYFVEEMYD------ 785
                            ||.::|||                .|.:..:.....|::|:.|      
  Rat  2307 TEEGHDSLSVGSFEEDSKSEFILDPPKPKPPAWFNGILTWEDFELVNPHRARFLKEIKDLAIKRR 2371

  Fly   786 -------------------------SSSG-QLS-------------------KTIELIPNGAKTR 805
                                     |.|| .||                   ..::|.|:|....
  Rat  2372 QILGNKSLSEDEKNTKLQELVLKNPSGSGPPLSIEDLGLNFQFCPSSRIYGFTAVDLKPSGEDEM 2436

  Fly   806 VTNATKNQYLDALAQQRLCNNVKDEVDSFLKGLNSIIPDNLLSIFDENELELLMCGTGEYSISDF 870
            :|.....:|:|.:....:...::.::::|..|.|.:.|...||.|...|:::::||....|   :
  Rat  2437 ITMDNAEEYVDLMFDFCMHTGIQKQMEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPS---W 2498

  Fly   871 KAHHIANGNSAE------------FRRVLAWFWAGVSNFSQTEMARLLQFTTGCSQLPPGGFQEL 923
            .|..|.|....:            |.|||.       ..|..|....||||||||.|||||...|
  Rat  2499 AAEDIINYTEPKLGYTRDSPGFLRFVRVLC-------GMSSDERKAFLQFTTGCSTLPPGGLANL 2556

  Fly   924 NPQFQIT--AAPTFGNLPTAHTCFNQLCLPDYESYEQFEKSLLLAISEGSEGF 974
            :|:..:.  ...|..:.|:.:||.:.|.||:|.|.|...:.||.|..|  :||
  Rat  2557 HPRLTVVRKVDATDASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME--KGF 2607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4238NP_001259896.1 IG_FLMN 238..336 CDD:214720
Filamin 238..336 CDD:279024
HECTc 615..975 CDD:238033 115/537 (21%)
HECTc 642..974 CDD:214523 105/480 (22%)
Hectd1XP_006240148.1 Ank_2 366..457 CDD:289560
ANK repeat 366..393 CDD:293786
ANK 369..479 CDD:238125
ANK repeat 396..426 CDD:293786
ANK repeat 428..457 CDD:293786
F5_F8_type_C 1107..1240 CDD:304887
MIB_HERC2 1277..1335 CDD:284184
HECTc 2131..2608 CDD:238033 112/510 (22%)
HECTc 2155..2607 CDD:214523 105/484 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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