DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4238 and Herc3

DIOPT Version :9

Sequence 1:NP_001259896.1 Gene:CG4238 / 33377 FlyBaseID:FBgn0031384 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_001102101.1 Gene:Herc3 / 362377 RGDID:1307803 Length:1050 Species:Rattus norvegicus


Alignment Length:777 Identity:169/777 - (21%)
Similarity:297/777 - (38%) Gaps:151/777 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 GGTMCFVVRFFQRNGQP---YPICDTDHFFVEVTEGT-----RKVVTISELGSSTDPNNANIAKV 310
            ||...||:.....|..|   :...:..|:...:.:.|     :|:         |:.||||    
  Rat   370 GGDQTFVLCSTYENSSPAVDFRTVNQAHYTNLINDETIAVWRQKL---------TEHNNAN---- 421

  Fly   311 KFTVRTAGQYKISVLIGAS-------------HIAGSPFLRSFLPGAIDARRSRFIRPASTVICC 362
              ||...    :.:|..|:             |...||    .:|| ||...:|.:         
  Rat   422 --TVNGV----VQILSSAACWNGSFLEKKIDEHFKTSP----KIPG-IDLNSTRVL--------- 466

  Fly   363 AGAPTLMH------IEPRDEFGNSCLFDQNQSD----EALQGYQVAIYDLHGVPVEKLQHAIVFA 417
              ...|||      :|.......|||..|..|.    ||::.|.:    |...|:  ||.:..:.
  Rat   467 --FEKLMHSQHSMILEQILNSFESCLIPQLSSSPPDVEAMRIYLI----LPEFPL--LQDSKYYI 523

  Fly   418 YDKVNSRVSVTALFPEPTCLRAVISYRDQQLPNGDFDIIVLSSSDTTLVHKNIASRK-------- 474
            ...:...:::..|...|:  :.:.::..|..|.....::.|..|....:   :..||        
  Rat   524 TLTIPLAMAILRLETNPS--KVLDNWWSQACPKYFMKLVTLYKSAVLYL---LRGRKTFLIPVLF 583

  Fly   475 -HNICYEAKLL-SIFGVS-KNKPRKVLCYVGPKQNSLIFQVTIKEMILKFIPKRIATFRLCPSTK 536
             :.:....||| .::.|: |.|..:...:..|:.:||   |.|:|..|.:...: :..:..||  
  Rat   584 NNYMTATLKLLEKLYKVNLKVKHVEYDKFYIPEISSL---VDIQEDYLMWFLHQ-SGMKARPS-- 642

  Fly   537 FHFLPQLVSQLHGPVFIIDDGAQPKIELASKDRNI---IAATFTH----FLLKNIGGSETFKDKQ 594
              .:...|:....| ||.|  ||.|.::...|..:   :|....:    |:|..:   |....:.
  Rat   643 --IMQDAVTLCSYP-FIFD--AQAKTKMLQTDAELQMQVAVNGANLQNVFMLLTL---EPLLARS 699

  Fly   595 DFFYHEVRKFHASYYHEKMALKVQREKILESSMKAVKGFSVSDWCGNFEVTFQGEQGIDWGGLRR 659
            .|                :.|.|:|..::..:::.:...|..|.....:|.|.||:|:|.||:.:
  Rat   700 PF----------------LVLHVRRNHLVGDALRELSIHSDIDLKKPLKVIFDGEEGVDAGGVTK 748

  Fly   660 EWFELVCSALFDARGGLFCTFHDKHQALVHPNPTRPAHLKLKHFEFAGKMVGKCLFESALGGTYR 724
            |:|.|:...|.:...|:|..:.|.:  |:..:.|  ..::...|...|...|..::.|.      
  Rat   749 EFFLLLLKELLNPIYGMFTYYQDSN--LLWFSDT--CFVEHNWFHLIGITCGLAIYNST------ 803

  Fly   725 QLVRARFSRSFLAQLIGLRVHYKYFEQDDPDLYLSKIKYILD---TDLDATDTLELYFVEEMYDS 786
             :|...|..:...:|:.::...:..::..|....| ::.:||   .|::.|..|......|.|  
  Rat   804 -VVDLHFPLALYKKLLNVKPSLEDLKELSPTEGRS-LQELLDYPGEDIEETFCLNFTVCRESY-- 864

  Fly   787 SSGQLSKTIELIPNGAKTRVTNATKNQYLDALAQQRLCNNVKDEVDSFLKGLNSIIPDNLLSIFD 851
              |.:.:. :|||.|.:..|....:.:::||........:|.:...:|..|...:....:|.:|.
  Rat   865 --GVIEQK-KLIPGGDRVAVCKDNRQEFVDAYVNYIFQISVHEWYTAFSSGFLKVCGGKVLELFQ 926

  Fly   852 ENELELLMCGTGEYSISDFKAHHIANGNSAEFRRVLAWFWAGVSNFSQTEMARLLQFTTGCSQLP 916
            ..||..:|.|...|:..:.:...:..|:.:.....:..||.....|...:..|.|.|.||..::|
  Rat   927 PAELRAMMVGNSNYNWEELEETAVYKGDYSSTHPTVKLFWETFHEFPLEKKKRFLLFLTGSDRIP 991

  Fly   917 PGGFQELNPQFQITAAPTFGN--LPTAHTCFNQLCLPDYESYEQFEKSLLLAISEGSEGFGM 976
            ..|...|....|.||.   |.  ||.||||:|.|.||.|.|.|..:..|..|: :..|||.:
  Rat   992 IYGMASLQIVIQSTAT---GEDYLPVAHTCYNLLDLPKYSSKEIMKARLTQAL-DNYEGFSL 1049

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4238NP_001259896.1 IG_FLMN 238..336 CDD:214720 20/102 (20%)
Filamin 238..336 CDD:279024 20/102 (20%)
HECTc 615..975 CDD:238033 89/364 (24%)
HECTc 642..974 CDD:214523 83/336 (25%)
Herc3NP_001102101.1 ATS1 2..331 CDD:227511
RCC1 313..377 CDD:395335 3/6 (50%)
HECTc 702..1048 CDD:238033 89/366 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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