DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4238 and Herc6

DIOPT Version :9

Sequence 1:NP_001259896.1 Gene:CG4238 / 33377 FlyBaseID:FBgn0031384 Length:977 Species:Drosophila melanogaster
Sequence 2:XP_008761185.1 Gene:Herc6 / 362376 RGDID:1561739 Length:1027 Species:Rattus norvegicus


Alignment Length:1130 Identity:216/1130 - (19%)
Similarity:375/1130 - (33%) Gaps:328/1130 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 MHAATGGKTFPTLKVKLCFGESMGISSLS-----SCGDPER--LPELPPLDEQRLQ----RAALH 105
            :.|.||.|.     :|...||...:...|     ||||..|  |.:..|...:|.:    .:.:|
  Rat    15 LEAGTGLKL-----LKAASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQSTKRPEPIQALSTVH 74

  Fly   106 LQQKLILREWLKDHRLQHHYQRLLAVEVASLEDVY-WLEDSRASKILGKDWQLWSGARQNLPTSK 169
            :.    |....|:|          :|.|.....|: |...|.....:|:..::     ..:||..
  Rat    75 ID----LVSCGKEH----------SVAVCHQGRVFTWGAGSEGQLGIGESKEI-----SFMPTKI 120

  Fly   170 AQLDALK-----------------AQLWSTVVKSSQHQDAWTWGGMLVVSVSVAGLVTLAAMTQP 217
            ..|..:|                 .|::|.   .|..|.....|..|....|...:.:|..:...
  Rat   121 NSLAGIKIIQVSCGHYHSLALSEDGQVFSW---GSNRQGQLGLGNNLCSQASPQKVKSLEGIPLA 182

  Fly   218 SLAPEARHSLLQYV-----------TGKYLLPANCKVQWDWKDPASVGGTMCFVVRFFQRNGQPY 271
            .:|....||....:           :|:..|..|...:..:| |.|:|......|        .|
  Rat   183 QVAAGGTHSFALSLMGTSFGWGNNRSGQLALSGNSAKEQIYK-PHSIGALKTLNV--------VY 238

  Fly   272 PICDTDHFFVEVTEGTRKVVTISELGSSTD-----PNN------------ANIAKVK-------F 312
            ..|..:|..|...:|  :|.|..  |||::     |.:            .::::::       .
  Rat   239 ISCGYEHTSVLTEDG--QVFTFG--GSSSEQLQHSPRSGRGGPQLIEGIGGHVSQIECGSYHTIA 299

  Fly   313 TVRTAGQYKISVLIGASHIAGSPFLRSFLPGAIDARRSRFIRPASTVICCAGAPTLMHIEPRD-- 375
            .|.|.||. :|:..|.|..:.:....:               ..|.|.|...|..|:.||.:|  
  Rat   300 YVYTTGQV-VSLGRGPSCTSNATHQEA---------------ACSDVTCLLSAKDLVDIEVKDIF 348

  Fly   376 -----EFGNSCLFDQNQS------DEALQGYQVAIYDLHGVPVEKLQHAIVFAYDKVNSRVSVTA 429
                 .|..:|...::.|      .|.::..|         |:.|...|........:::..::.
  Rat   349 AGAHANFVTTCRHTRSTSVSMKILPEIIRITQ---------PLVKKWRAAKKGKVHEDAKREISL 404

  Fly   430 LFPEPTCLRA-VISYRDQQLPNGDFDIIVLSSSDTTLVHKNIASRKH-----NICYEAKLLSIFG 488
            :|..|.||.| .:..||.    |:.:.|.:.......|.|.:.:.|.     ..|.|..||    
  Rat   405 IFSSPACLTASFLKKRDA----GENNFINVDLKLARDVFKMLTAEKWISSLITTCLEETLL---- 461

  Fly   489 VSKNKPRKVLCYVGPKQNSLIFQVTIKEMILKFIPKRIATFRLCPSTKFH--------FL----- 540
                   :.|.|..|.|.:|:..:.:.|..:...||...|.....::..|        ||     
  Rat   462 -------RGLPYSSPHQEALLVFLLLPECSIMQDPKNWKTLAFEFASAIHKMRSKSLTFLRNWWA 519

  Fly   541 ---------------PQLVSQLHGPVFIIDDGAQPKI--ELASKDRNIIAATFTH---------- 578
                           ..:|||||..|.::.|.:..|:  |:..:.:.|:..|.:|          
  Rat   520 SLEVSSLNSLVQMLKKTIVSQLHNEVPMMKDTSNLKVSLEMMKEVQKILEKTNSHLHNEVPKMED 584

  Fly   579 -------------------------FLLK---NIGGSETFKDKQDFFYHEVRKFHASYYH----- 610
                                     |::.   |....|....||..|:   .|:::..::     
  Rat   585 TSNLKVLLEVMKEVHEANCQLPENAFIMNDIFNFNTEEGIMAKQQMFF---IKYYSMVFNDFPFI 646

  Fly   611 ----------------------------EKMA-----LKVQREKILESSMKAVKGFSVSDWCGNF 642
                                        |||.     |||:|..::|.:::.::.....|.....
  Rat   647 LDLPSKIILMKHDSSVKLSDEVKVAASPEKMGCPFFILKVRRSHLVEDTLRQLRQAEDFDLRKTL 711

  Fly   643 EVTFQGEQGIDWGGLRREWFELVCSALFDARGGLFCTFHDKHQALVHPN-------PTRPAHLKL 700
            .|.|..|...:.||:..|:|..:...:.|          .|::..::|.       |..|...|.
  Rat   712 SVGFINEIRPEGGGVSSEFFHCIFEEMTD----------PKYEMFMYPENGSNMWFPVNPKFEKS 766

  Fly   701 KHFEFAGKMVGKCL---------FESALGGTYRQLVRARFSRSFLAQLIGLRVHYKYFEQDDPDL 756
            ::|.| |.:.|..|         |..||   |::|:..:.|...|..|               .|
  Rat   767 RYFLF-GILCGLSLNNLNVINLSFPLAL---YKKLLEQKPSLEDLKDL---------------SL 812

  Fly   757 YLSK-IKYILDTDLDATDTLELYFVEEMYDSSSGQLSKTIELIPNGAKTRVTNATKNQYLDALAQ 820
            .|.: ::.:|:.:....:.|.:||  .:|..     .:.::|||:|....|....|..|:.....
  Rat   813 LLGRNLQEVLNCEAGVIEELHMYF--SIYWD-----QRDVDLIPDGISVPVNETNKRDYVSKCVD 870

  Fly   821 QRLCNNVKDEVDSFLKGLNSIIPDNLLSIFDENELELLMCGTGEYSISDFKAH-HIANGNSAEFR 884
            .....::|...|.|.:|...:...:.:..|...||...:.|........|:.: ...||.|....
  Rat   871 YIFNISIKTIYDEFHRGFYKVCNRDSIRHFQPEELMAAIIGNPTCDWKQFENNSKYENGYSKSHP 935

  Fly   885 RVLAWFWAGVSNFSQTEMARLLQFTTGCSQLPPGGFQELNPQFQITAAPTFGNLPTAHTCFNQLC 949
            .:|. ||......:..|..:.|.|.|||.:|...|.|....:|:.....:..:.|.:.||.:.|.
  Rat   936 TILL-FWKAFHELTLDEKKKFLLFLTGCDRLHVKGLQNEGIRFRCPEVFSERDNPRSLTCHSILD 999

  Fly   950 LPDYESYEQFEKSLLLAISEGSEGF 974
            ||.|.:..:.:::|.:||: .::||
  Rat  1000 LPKYSTMRRMKEALQVAIN-NNKGF 1023

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4238NP_001259896.1 IG_FLMN 238..336 CDD:214720 24/121 (20%)
Filamin 238..336 CDD:279024 24/121 (20%)
HECTc 615..975 CDD:238033 83/378 (22%)
HECTc 642..974 CDD:214523 75/349 (21%)
Herc6XP_008761185.1 RCC1 39..88 CDD:278826 13/62 (21%)
RCC1 92..141 CDD:278826 8/53 (15%)
RCC1 144..194 CDD:278826 11/52 (21%)
RCC1_2 182..210 CDD:290274 3/27 (11%)
RCC1_2 236..265 CDD:290274 11/40 (28%)
RCC1 252..299 CDD:278826 7/50 (14%)
HECTc 682..1023 CDD:238033 81/378 (21%)
HECTc 706..1023 CDD:214523 76/354 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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