DRSC/TRiP Functional Genomics Resources

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Protein Alignment Wdr62 and Rbcn-3B

DIOPT Version :10

Sequence 1:NP_001259886.1 Gene:Wdr62 / 33367 FlyBaseID:FBgn0031374 Length:2397 Species:Drosophila melanogaster
Sequence 2:NP_569960.2 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster


Alignment Length:557 Identity:111/557 - (19%)
Similarity:163/557 - (29%) Gaps:239/557 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   368 CIAMVF--DEQRSKVSCVYNDHSLYIWDLRDISRVGKSHSFLYHSTCIWGVETVPYNVEREP--- 427
            ||:.||  |:|.:.|:..|:.                       ..|:|.||  |..::..|   
  Fly    21 CISSVFLSDDQFTLVTGCYDG-----------------------QICLWQVE--PTTLKMSPRCL 60

  Fly   428 -------------SQTLPEECFVTCSSDD-TIRVWGL-DG-CTNNDIYRRNIYSKELLKIVYSDD 476
                         :..|||..|:..||:: .:..|.| || |            .|.:|:.....
  Fly    61 LVGHSAPVLCLVRASLLPENNFLVSSSENGEMCTWDLTDGKC------------MEAVKLPQVHT 113

  Fly   477 ELQFIKDQGSSLFDKAGNSSYDGRNG--VR--CI----------------------KISPE---- 511
            ::|                ||...|.  ||  ||                      |:.|:    
  Fly   114 QIQ----------------SYHTANSEDVRLFCIGYYAEIMVMDPFSLEVIYVLSSKVKPDWISA 162

  Fly   512 ---LQHLASGD-------RCGNIRVYSLV---NLRLLTTIEAHESEVLCLEYSNEKIERKLLASA 563
               |:.:...|       ..|.::|::|.   |.......|....|:.||    ..|.....|..
  Fly   163 IHVLRPMRRKDDVVLAITTTGTVKVWTLTGNENKHAEPIYENESKEIRCL----NAITMNCCAQN 223

  Fly   564 SRDRLIHVFDVAQNYLLLQTLDDHSSSITSIKFVGAGLNFQMISCGADKSIMFRSFQGNIFMRGT 628
            .|..|:    |...|..:....|.:                 :.|........| :||..|:   
  Fly   224 QRTVLL----VCTKYWQIYDAGDFT-----------------VLCSVIAPARER-WQGGDFI--- 263

  Fly   629 NTSGKTTLYDMEVDSNAKHILTACQDRNVRVYGTQNAKQTKTFKGSHSDEGSLIKLSLDPSGIYV 693
             ||.:..|:..|.......:...|...|               |..||.  |:::.:  |...||
  Fly   264 -TSDRVMLWTDEGKGYLYKLPANCIPDN---------------KEFHSK--SVVRDA--PYLYYV 308

  Fly   694 ATSCTDKTLAVYDYYSNECMARMYGHSELVTGLKFTNDCRHLISASGDGCIFIWQVPH---DMIV 755
            .....||.|:        |...|    :|:.|   .....:|:....:|.|.:|.||.   |.|.
  Fly   309 LQHAGDKVLS--------CPPAM----KLLQG---AGGQHNLLRGDSEGYISVWNVPEVPLDNIS 358

  Fly   756 TMQARMSQQRLRSGHAPLPRPLAP-------------ISPPDGI------VLESP---TSEIEQP 798
            .:||:...          ||||.|             ..||.||      :.|||   ||.|..|
  Fly   359 ILQAKQMP----------PRPLKPHVCTSLVEAWSIMDPPPVGILDQLSRITESPVKLTSSIYLP 413

  Fly   799 Q-----------------------LQPKFGVAERFSD 812
            |                       :|...|:.:.|||
  Fly   414 QQSRLVIGREDGSIVIVPATQTVMMQLLVGIKQNFSD 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Wdr62NP_001259886.1 WD40 <73..236 CDD:441893
WD40 repeat 73..107 CDD:293791
WD40 repeat 113..161 CDD:293791
WD40 156..573 CDD:475233 51/268 (19%)
WD40 repeat 167..207 CDD:293791
WD40 repeat 209..285 CDD:293791
WD40 repeat 303..338 CDD:293791
WD40 repeat 353..407 CDD:293791 8/40 (20%)
WD40 <437..750 CDD:441893 65/358 (18%)
WD40 repeat 505..540 CDD:293791 10/73 (14%)
WD40 repeat 546..586 CDD:293791 8/39 (21%)
WD40 repeat 591..631 CDD:293791 5/39 (13%)
WD40 repeat 637..672 CDD:293791 3/34 (9%)
WD40 repeat 679..717 CDD:293791 8/37 (22%)
WD40 repeat 723..749 CDD:293791 5/25 (20%)
Rbcn-3BNP_569960.2 WD40 repeat 20..63 CDD:293791 14/66 (21%)
WD40 <22..202 CDD:475233 42/232 (18%)
WD40 repeat 68..107 CDD:293791 12/50 (24%)
WD40 repeat 118..152 CDD:293791 6/33 (18%)
WD40 repeat 160..204 CDD:293791 6/43 (14%)
WD40 repeat 212..251 CDD:293791 9/63 (14%)
WD40 repeat 406..459 CDD:293791 10/45 (22%)
WD40 453..>597 CDD:475233
WD40 repeat 513..555 CDD:293791
WD40 repeat 560..596 CDD:293791
GvpP <735..816 CDD:444004
WD40 <1408..>1469 CDD:441893
WD40 repeat 1439..1466 CDD:293791
Blue background indicates that the domain is not in the aligned region.

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