DRSC/TRiP Functional Genomics Resources

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Protein Alignment Wdr62 and F47G4.4

DIOPT Version :9

Sequence 1:NP_001259886.1 Gene:Wdr62 / 33367 FlyBaseID:FBgn0031374 Length:2397 Species:Drosophila melanogaster
Sequence 2:NP_493453.1 Gene:F47G4.4 / 173271 WormBaseID:WBGene00009825 Length:722 Species:Caenorhabditis elegans


Alignment Length:542 Identity:101/542 - (18%)
Similarity:195/542 - (35%) Gaps:137/542 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   534 LLTTIEAHESEVLCLEYSNEKIERKLLASASRDRLIHVFDVAQNYLLLQTLDDHSSSITSIKFVG 598
            |.:|....|..:.||..|.:  ||.:  .|:.:.::.|.|:...: .::.|..|:..|||:    
 Worm    44 LPSTSTLSELPIECLRLSTD--ERTI--GAATNAILKVADIITGH-EVRNLTGHTLPITSL---- 99

  Fly   599 AGLNFQMISCGADKSIMFRSFQGN----------------IFMRGTNTSGKTTLYDMEVDSNAKH 647
                      .|.|...:..:.|:                ||  |:.|.|  .:..:.:....::
 Worm   100 ----------AASKFNPYCWYTGSSDCDWTQWDTRMNPSKIF--GSKTPG--VVRSIALSPGDRY 150

  Fly   648 ILTACQDRNVRVYGTQNAKQTKTFKGS-HSDEGSLIKLSLDPSGIYVATSCTDKTLAVYDYYSNE 711
            :... .|..::::..:..:..|||..| |:       |.|.||.:.:::...|:.:..:...:.|
 Worm   151 VAVG-TDETIQIFDARQREFIKTFNCSGHA-------LELHPSDVLLSSVGHDRIVRFFCLETFE 207

  Fly   712 CMARMYGHSELVTGLKFTNDCRHLISASGDGC-IFIWQVPHDMIVTMQARM-------------- 761
            .:::.....:.:....|  |...:|:|:.|.. :..|:...|::.|:..:.              
 Worm   208 MISQSDPFLDDIQASAF--DTHVMIAATNDSINLLTWEPCCDILTTVPLKNVEKVVNVNANGLDL 270

  Fly   762 -------SQQRLRS---------GHAPLPRPLAPISPPDGIVLESPTSEIEQ-PQLQPKFGVAER 809
                   :.:||..         .::|.......|...|..|..||..|::. |:|         
 Worm   271 DFICIGDNTERLEMRTYAIEELLSYSPSHELCGSIYEEDEDVDNSPIDEVKALPEL--------- 326

  Fly   810 FSDVGQLPQWAMRKAAADSDSGALSIPTPSGGSA------TVPGMHAASSMGNLSSSPSQQMTGL 868
             :::..||..:...:..::::.|..:.:.|..|:      ..|..|.::|    ...|.:....|
 Worm   327 -TELSNLPPRSPGLSCEETETSASPVNSSSSHSSPTSPVKPAPVKHRSAS----QKLPGKSTKTL 386

  Fly   869 APRARGRWAQRSTQLETADDLRSNSESPLGTVSSVGGHSGVNVQTSDYNSASSKDITYNQ----- 928
            .|:..|  :.||....:....|:...:....|||....||.|.:.:...|.|....|.:.     
 Worm   387 NPKPAG--STRSVTPVSTKPPRTFGTAKSVIVSSKPSLSGYNNRANPSPSMSDLRTTKSMAGSTT 449

  Fly   929 TYLSEDSSIDSGMETRRGE----LKFIG---SSNNGTVV-TVSSVSS------------------ 967
            :.|||.:.......:||.:    :.:||   :.:.|.|. ||||.:|                  
 Worm   450 SLLSERAPKKRSTSSRRNQEPITITYIGRPRTPSEGDVASTVSSSTSRNRRPSPSVAKKTSPPSI 514

  Fly   968 --IAVSASNGAMSTGSGAAQQR 987
              |..|.:..|.||.||...:|
 Worm   515 YAITSSPAKRASSTASGPTARR 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Wdr62NP_001259886.1 WD40 73..448 CDD:295369
WD40 repeat 73..107 CDD:293791
WD40 repeat 113..161 CDD:293791
WD40 158..574 CDD:225201 10/39 (26%)
WD40 repeat 167..207 CDD:293791
WD40 repeat 209..285 CDD:293791
WD40 repeat 254..294 CDD:293791
WD40 repeat 303..338 CDD:293791
WD40 repeat 353..407 CDD:293791
WD40 385..747 CDD:225201 41/230 (18%)
WD40 436..748 CDD:295369 41/231 (18%)
WD40 repeat 505..540 CDD:293791 2/5 (40%)
WD40 repeat 546..586 CDD:293791 9/39 (23%)
WD40 repeat 591..631 CDD:293791 9/55 (16%)
WD40 repeat 637..672 CDD:293791 3/34 (9%)
WD40 repeat 679..717 CDD:293791 6/37 (16%)
WD40 repeat 723..749 CDD:293791 6/26 (23%)
F47G4.4NP_493453.1 WD40 <54..317 CDD:225201 48/295 (16%)
WD40 54..>236 CDD:295369 37/214 (17%)
WD40 repeat 56..91 CDD:293791 9/39 (23%)
WD40 repeat 96..132 CDD:293791 8/51 (16%)
WD40 repeat 140..174 CDD:293791 3/34 (9%)
WD40 repeat 177..207 CDD:293791 6/36 (17%)
WD40 repeat 215..258 CDD:293791 8/44 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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