DRSC/TRiP Functional Genomics Resources

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Protein Alignment Wdr62 and nwd1

DIOPT Version :9

Sequence 1:NP_001259886.1 Gene:Wdr62 / 33367 FlyBaseID:FBgn0031374 Length:2397 Species:Drosophila melanogaster
Sequence 2:XP_009304095.1 Gene:nwd1 / 100330908 ZFINID:ZDB-GENE-071116-8 Length:1622 Species:Danio rerio


Alignment Length:875 Identity:157/875 - (17%)
Similarity:283/875 - (32%) Gaps:305/875 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 HHQRMALQSQSQ-----SPLASPLTPSPSSVFGSPKFPANYERSEKIKL----KKVLGLTVCSNA 72
            |:..|..|..||     ...:.||.....|.|.:|..|.      |..|    |.|..:.:||..
Zfish   882 HYPSMIGQLCSQCMDWFESYSDPLLVPKCSFFEAPGGPL------KSTLRGFTKGVKAVVLCSKR 940

  Fly    73 ALDVSPVSGLLAYPAGCTVVLFNAKRQTQAYLVNTSRKAFTSVAFSRCGRYVATGEC---GINPA 134
            .|       |||......:::::.......:.::..:....|:..:.     .|..|   |::..
Zfish   941 KL-------LLAGSEDGLIIVWSLNNLQPLHTLSGHKAGVLSLKLTD-----KTNNCLSTGLDGT 993

  Fly   135 IKVWELETPNGSLEHCSGGSVVAEFVDHKYAVTCVAFSPTGKYLVSVGSQHDMIVNVFDWRANLK 199
            ::.|.|         .||..:.. ..|   ||:....|||..::                     
Zfish   994 LRKWCL---------ISGLQLFC-ITD---AVSVQTHSPTHIHM--------------------- 1024

  Fly   200 MASNKISSKVAAVCFSEDGSYFVTVGNRHVKYWYLEGGRKYKDPIPLMGRSAILGDLRDNDFCAV 264
                           :|:....:|..:..||.|.|:......:...::|  ::||.:.|.    :
Zfish  1025 ---------------NEERKIIITNPSSQVKAWDLDTAEPLFELTAVIG--SVLGIVEDE----I 1068

  Fly   265 ACGKGICAE--------STYAITRQ-------GH---------------LVEFSSRRLLDKW--- 296
            ||   ||:|        ||...|.|       ||               |:.|...||...|   
Zfish  1069 AC---ICSEAILCFYDISTGTQTSQTLLPYSAGHHNITCCLTLTKHSKILIAFGESRLHSVWSHE 1130

  Fly   297 -----------VQCRTTNANCICVNERFILVGCAESIIRIFNSATLEYVTTLPRTHYLGVDVAQG 350
                       :..||:.      :|:.:|.||..::        ..::.||...|.:       
Zfish  1131 MESVIDLPSPALFLRTSE------DEKLLLAGCDRTL--------CVFLVTLTSMHKV------- 1174

  Fly   351 IQINHIMSVPQQAKFPDCIAMVFDEQRSKVSCVYNDHSLYIWDLRDISRVGKSHSFLYHSTCIW- 414
            :.:.|..|:         :..|.:.:.|::.....|..:.:|            |....:...| 
Zfish  1175 LDLQHDASI---------LCAVSNSEGSEIITSAQDRIIRVW------------SVTTGALLDWI 1218

  Fly   415 GVETVPYNVEREPSQTLPEECFVTCSS--DDTIRVWGLDGCTNNDIYRRNIYSKELLKIVYSDDE 477
            ||      ::...|.....:.|:..:|  .:.::||.||   :|..:|...:......:..    
Zfish  1219 GV------MDSSVSSLAVHQRFIISASVIVNQLKVWQLD---HNTTHRNKSFIPAYCPLAV---- 1270

  Fly   478 LQFIKDQGSSLFDKAGN------------------SSYDGRNGVRCIKISPELQHLASGDRCGNI 524
              ..||..:..:.|.||                  .|.|..:.|.|::::.:.:.|..|...|.|
Zfish  1271 --LSKDGDTVFYVKEGNKTEVFTWSCSEGETCLQLDSMDVSSEVCCMELAQQKRLLFCGLHTGTI 1333

  Fly   525 RVYSLVNLRLLTTIEAHESEVLCLEYSNE-KIERKLLASASRDRL-------IHVFDVA------ 575
            .:|.|..:          .|.|||..... .:.|.:..|...|::       :.:|::.      
Zfish  1334 FIYPLDFI----------PETLCLPPPESLPMVRSMAISPREDKMAVAYEDAVCLFEITARDSFP 1388

  Fly   576 ------QNYLLLQTLDDHSSSITSIKFVGAGLNFQMISCGADKSIMFRSFQGNIFMRGTNTSGKT 634
                  :.|    :||...|||:::..:            :|..:::.:|           .|:.
Zfish  1389 CVDGPFERY----SLDLLHSSISAMALL------------SDCRLLYGTF-----------GGEV 1426

  Fly   635 TLYDM------EVDSNAKHI--LTACQDRNVRVYGTQNAKQ------------TKTFKGSHSDEG 679
            .:||.      |:|.:...|  :|........:.|:|:..|            |..:||.:. ||
Zfish  1427 VIYDFKSATAAELDHHGAAITCITMSNWDAQALIGSQDCVQKLWNLSPVLLNHTMEYKGFYF-EG 1490

  Fly   680 SLIKL-SLDPSGIYVATSCTDKTLAVYDYYSNECMARMYGHSELVTGLKFTNDCRHLISASGDGC 743
            .|..: |::..  ||.|...|||:.|:|..|...:...|.:|.::.           :....||.
Zfish  1491 VLCAVFSINDK--YVFTGSLDKTVKVWDVSSGCLLYIQYVYSPVIR-----------MMPHKDGF 1542

  Fly   744 IFIWQVPHDMIVTMQARMSQQRLRSGHAPL 773
            :.:.|  |...:....|.... |:.|:.||
Zfish  1543 VAVSQ--HGSFIKEGFRCPDS-LKPGYNPL 1569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Wdr62NP_001259886.1 WD40 73..448 CDD:295369 66/424 (16%)
WD40 repeat 73..107 CDD:293791 4/33 (12%)
WD40 repeat 113..161 CDD:293791 8/50 (16%)
WD40 158..574 CDD:225201 83/488 (17%)
WD40 repeat 167..207 CDD:293791 3/39 (8%)
WD40 repeat 209..285 CDD:293791 21/105 (20%)
WD40 repeat 254..294 CDD:293791 17/69 (25%)
WD40 repeat 303..338 CDD:293791 5/34 (15%)
WD40 repeat 353..407 CDD:293791 7/53 (13%)
WD40 385..747 CDD:225201 76/423 (18%)
WD40 436..748 CDD:295369 69/372 (19%)
WD40 repeat 505..540 CDD:293791 7/34 (21%)
WD40 repeat 546..586 CDD:293791 9/59 (15%)
WD40 repeat 591..631 CDD:293791 3/39 (8%)
WD40 repeat 637..672 CDD:293791 10/54 (19%)
WD40 repeat 679..717 CDD:293791 12/38 (32%)
WD40 repeat 723..749 CDD:293791 2/25 (8%)
nwd1XP_009304095.1 DUF4062 39..117 CDD:290011
AAA 373..>417 CDD:99707
WD40 920..1208 CDD:295369 65/405 (16%)
WD40 repeat 932..968 CDD:293791 6/42 (14%)
WD40 940..1339 CDD:225201 86/525 (16%)
WD40 repeat 973..1016 CDD:293791 11/60 (18%)
WD40 repeat 1020..1054 CDD:293791 7/69 (10%)
WD40 repeat 1071..1127 CDD:293791 13/55 (24%)
WD40 repeat 1135..1176 CDD:293791 9/61 (15%)
WD40 1138..1516 CDD:295369 83/474 (18%)
WD40 1172..1546 CDD:225201 81/467 (17%)
WD40 repeat 1183..1207 CDD:293791 3/32 (9%)
WD40 repeat 1225..1256 CDD:293791 8/33 (24%)
WD40 repeat 1257..1294 CDD:293791 6/42 (14%)
WD40 repeat 1312..1351 CDD:293791 12/48 (25%)
WD40 repeat 1358..1401 CDD:293791 5/46 (11%)
WD40 repeat 1407..1441 CDD:293791 6/56 (11%)
WD40 repeat 1446..1482 CDD:293791 6/35 (17%)
WD40 repeat 1492..1524 CDD:293791 11/33 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576148
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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