DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wry and notch1b

DIOPT Version :9

Sequence 1:NP_995611.2 Gene:wry / 33361 FlyBaseID:FBgn0051665 Length:1157 Species:Drosophila melanogaster
Sequence 2:XP_005168706.1 Gene:notch1b / 794892 ZFINID:ZDB-GENE-990415-183 Length:2482 Species:Danio rerio


Alignment Length:593 Identity:154/593 - (25%)
Similarity:222/593 - (37%) Gaps:183/593 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   532 ARPRILSRLQEKINSLECEIPNVPQDSHLWRGNETHELLLPIVTTEHCKPDEHCVPNVLTWRGEA 596
            :.|....|..:|||..||.                            |:|.              
Zfish   644 SNPCDFGRCIDKINGYECA----------------------------CEPG-------------- 666

  Fly   597 EIQSGDILIVEINDAMLNPSHEPNNTSSAVHATQVYQ-VTRSG-------------------HEH 641
              .:|.:..:.|::..:||.|   |..:.|.....:. :.|.|                   |.|
Zfish   667 --YTGKMCNINIDECAINPCH---NGGTCVDGVNGFTCLCREGYHDTTCQSQLNECLSNPCIHGH 726

  Fly   642 CDVT------------EGVLLDI-------TPLVVDGRKLVTLYDKDLTEG-------------- 673
            |:..            .||..||       .|.:..|.      .||:|.|              
Zfish   727 CEDKVNGYNCICDSGWSGVNCDINNNECESNPCMNGGT------CKDMTSGYVCTCRAGFSGPNC 785

  Fly   674 ------------VNLLIVVSELWGAQCVRLKVTTKTDNC-----GENAD----------CSGKGV 711
                        :|....:.::.|.:|          ||     |||.:          |...||
Zfish   786 QTNINECASNPCLNQGTCIDDVAGYKC----------NCLLPYTGENCETLLAPCGSKPCKNGGV 840

  Fly   712 CYSNSGMEEYECQCCSGFAGPHCE-EIDACNPSPCTNNGICVDLSQGHEGNSYQCLCPYGYAGKN 775
            |..:...|.:.|.|.:|:.|..|| :|:.|..:||.|:.||    |...| ||:|.|..||.|:|
Zfish   841 CKESEDYESFSCVCPAGWQGQTCEVDINECVKNPCRNDAIC----QNSIG-SYKCSCKAGYTGRN 900

  Fly   776 CQYESDPCNPAECMNGGSCVGNSTHFRCDCAPGFTGPLCQHSLNECESSPCVHGI-CVDQEDGFR 839
            |:.:.|.|.|..|.|||.|......|.|.|.|||.|..|:..:|||||:||.:|. |.|..:.:.
Zfish   901 CETDIDDCKPNPCSNGGFCKDAVNAFACTCLPGFRGGRCEEDINECESNPCKNGANCTDCVNSYT 965

  Fly   840 CFCQPGFAGELCNFEYNECESNPCQNGGECIDHIGSYECRCTKGFSGNRCQIKVDFCANKPCPEG 904
            |.|.|||:|..|.....:|..:.|.|||.|:|.|.|:.|.|.|||:||.||..::.|.::||..|
Zfish   966 CTCPPGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPKGFTGNYCQHDINECDSRPCMNG 1030

  Fly   905 HRCIDHGNDFSCECPGGRNGPDCNQMPRTYFQQCNVNPCTHGGTCWSSGDSFYCACRPGYTGTMC 969
            ..|.|....:.|.||.|.:|.:|.::    ...|..:||.:||.|..||..:.|.|:.|:||..|
Zfish  1031 GTCQDSYGTYKCTCPQGYHGLNCQEL----VNWCKPSPCKNGGICRQSGTRYSCQCQTGWTGLYC 1091

  Fly   970 EDEFVVETVVSSSEFIVDDANARNFNDKTFGSSVVLKSPIELHNAYFAAGVLAAAIFIVAVVVTI 1034
            :...|...|.:..:.:......||..           ..::..|.::                  
Zfish  1092 DVPSVSCEVAAKQQGVDVVRLCRNSG-----------QCLDAGNTHY------------------ 1127

  Fly  1035 CHCKVNQT 1042
            |||:...|
Zfish  1128 CHCQAGYT 1135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wryNP_995611.2 EGF_CA 737..777 CDD:238011 17/39 (44%)
EGF 783..812 CDD:278437 13/28 (46%)
EGF_CA 819..851 CDD:238011 16/32 (50%)
EGF_CA 856..890 CDD:238011 16/33 (48%)
EGF_CA 893..927 CDD:238011 11/33 (33%)
EGF_CA <941..970 CDD:238011 12/28 (43%)
notch1bXP_005168706.1 EGF_CA 175..213 CDD:238011
EGF_CA 221..252 CDD:238011
EGF_CA 254..290 CDD:238011
EGF_CA 292..329 CDD:238011
EGF_CA 332..367 CDD:238011
EGF_CA 409..447 CDD:238011
EGF_CA 449..485 CDD:238011
EGF_CA 487..523 CDD:238011
EGF_CA 525..561 CDD:238011
EGF_CA 563..598 CDD:238011
EGF_CA 600..636 CDD:238011
EGF_CA 638..672 CDD:238011 10/71 (14%)
EGF_CA 675..711 CDD:238011 8/38 (21%)
EGF_CA 715..747 CDD:238011 5/31 (16%)
EGF_CA 752..786 CDD:238011 6/39 (15%)
EGF_CA 788..824 CDD:238011 8/45 (18%)
EGF_CA 866..902 CDD:238011 17/40 (43%)
EGF_CA 904..940 CDD:238011 15/35 (43%)
EGF_CA 942..978 CDD:238011 16/35 (46%)
EGF_CA 985..1016 CDD:238011 15/30 (50%)
EGF_CA 1018..1054 CDD:238011 11/35 (31%)
EGF 1060..1090 CDD:278437 13/29 (45%)
EGF_CA 1143..1177 CDD:238011
EGF_CA 1181..1216 CDD:238011
EGF_CA 1218..1262 CDD:238011
EGF_CA 1264..1298 CDD:238011
EGF_CA <1309..1340 CDD:238011
NL 1437..1473 CDD:197463
Notch 1481..1516 CDD:278494
NL 1515..1555 CDD:197463
NOD 1561..1612 CDD:284282
NODP 1667..1724 CDD:284987
Ank_2 <1867..1953 CDD:289560
ANK repeat 1874..1920 CDD:293786
ANK 1917..2029 CDD:238125
ANK repeat 1922..1953 CDD:293786
Ank_2 1927..2020 CDD:289560
ANK repeat 1955..1986 CDD:293786
ANK 1984..2108 CDD:238125
ANK repeat 1989..2053 CDD:293786
Ank_2 1994..2086 CDD:289560
ANK repeat 2055..2086 CDD:293786
DUF3454 2404..2467 CDD:288764
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I12101
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D7525at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.