DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17646 and ABCG29

DIOPT Version :9

Sequence 1:NP_608618.1 Gene:CG17646 / 33354 FlyBaseID:FBgn0264494 Length:766 Species:Drosophila melanogaster
Sequence 2:NP_566543.1 Gene:ABCG29 / 820881 AraportID:AT3G16340 Length:1416 Species:Arabidopsis thaliana


Alignment Length:731 Identity:184/731 - (25%)
Similarity:304/731 - (41%) Gaps:180/731 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 NSDASSSSGVCSLK--GHHGDPD------SGCLG----INCCTTAASSELS--------IDETSS 64
            :||.|:|.|:..|:  ....||:      .|.||    .|...|.|.:.|:        :.:.::
plant   721 SSDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENT 785

  Fly    65 TSSRGSCELTSKVTNDLNGFQSPNYHQAVAHANFDHCDPVDIQFADVRYTVKKFSFPERKFVTK- 128
            ..:|......||..:...|...|             ..|:.:.|.:|.|.|......:.:.|:| 
plant   786 EENRAENGSKSKSIDVKRGMVLP-------------FTPLTMSFDNVNYYVDMPKEMKEQGVSKD 837

  Fly   129 --EILHGLNGSFRSGELTAIMGPSGAGKSTLLNVMSGFCSTG-VSGDIRVNRKPMAPSSERFRQM 190
              ::|..:.|.||.|.|||:||.|||||:||::|::|..:.| :.||||::..|  ...|.|.::
plant   838 KLQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP--KRQETFARI 900

  Fly   191 LCYIHQDDLLRPQLLVGEIMLLAAHLKLGFKVTKAYKMDLIKHILSLLGLDHRYNVPTG-----K 250
            ..|..|:|:..||:.|.|.::.:|.|:|..:|||..||..:..::.|:.|:...:...|     .
plant   901 SGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPGITG 965

  Fly   251 LSGGQKKRLAIALELISNPPVLYLDEPTTGLDSSSCSSCVALLKKLASQGHTIVCTIHQPSALIF 315
            ||..|:|||.||:||::||.::::||||:|||:.:.:..:..::.....|.|:||||||||..||
plant   966 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1030

  Fly   316 EMFDKLYTVV-DGHCMYQGPVREL-------------VPFLADQQLVCPSYHNPADYLLEVAVGE 366
            |.||:|..:. .|..:|.||:.:.             ||.:.::       :|||.::|||:   
plant  1031 EAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEK-------YNPATWMLEVS--- 1085

  Fly   367 HQRDLNELIHAANKKYYEDVDRHRYMSSDDMARLVESIKENMGGKAVVKTSEALAAFAAAQFSSF 431
                                                                ::||.|..:....
plant  1086 ----------------------------------------------------SMAAEAKLEIDFA 1098

  Fly   432 DYVKPSPQELALEEIKALSGGPESADPDLLEKNLRPQPQPLAKAGELARPPNAIR--------SA 488
            ::.|.|                          :|..|.:.|.|  ||:.||....        |.
plant  1099 EHYKTS--------------------------SLYQQNKNLVK--ELSTPPQGASDLYFSTRFSQ 1135

  Fly   489 SFLMQYVLLMQRILICAKRNYFLLLARIFSHIFIGVVFGYLYMNVG------NNAQSVLGNYVYL 547
            |.|.|:...:.:..|...|.....|||.|..:...|:.|.::..||      |:...|:|   .:
plant  1136 SLLGQFKSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIG---AM 1197

  Fly   548 YGSTLLLVYTGKMAVVLTFPLEIDMLTREHFNRWYKLGPYFLSLISFEIPFQSLCTAMYIIISVH 612
            |.:.|.:......:|.....:|..:..||.....|...||.|:.:..|||:..:.|..|.:|...
plant  1198 YAAVLFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTLIIYA 1262

  Fly   613 LTGNDATDSFRIYYFMLLGIMASLSAQAWGFFVGATLPTK--LAVFLGPILAVMFSVF-GFCTRY 674
            :...:.|.: :.::|..:..|:.|....:|....|..|.:  .|||.|.... :|::| ||    
plant  1263 MMCFEWTLA-KFFWFYFVSFMSFLYFTYYGMMTVALTPNQQVAAVFAGAFYG-LFNLFSGF---- 1321

  Fly   675 IDITPLFR----WMWH 686
              :.|..|    |:|:
plant  1322 --VIPRPRIPKWWIWY 1335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17646NP_608618.1 ABCG_EPDR 103..333 CDD:213180 89/239 (37%)
3a01204 123..765 CDD:273361 159/608 (26%)
ABC2_membrane 497..698 CDD:279410 48/203 (24%)
ABCG29NP_566543.1 PLN03140 1..1416 CDD:215599 184/731 (25%)
ABC_trans_N 54..141 CDD:291196
ABCG_PDR_domain1 156..402 CDD:213200
ABC2_membrane 503..709 CDD:279410
PDR_assoc 716..780 CDD:285559 15/58 (26%)
ABCG_PDR_domain2 811..1049 CDD:213199 89/239 (37%)
ABC2_membrane 1144..1351 CDD:279410 48/203 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.