DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17646 and Abca6

DIOPT Version :9

Sequence 1:NP_608618.1 Gene:CG17646 / 33354 FlyBaseID:FBgn0264494 Length:766 Species:Drosophila melanogaster
Sequence 2:NP_671751.2 Gene:Abca6 / 76184 MGIID:1923434 Length:1624 Species:Mus musculus


Alignment Length:580 Identity:129/580 - (22%)
Similarity:209/580 - (36%) Gaps:172/580 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 DHCDPVDIQFAD-----VRYTVKKFSFPERKFVTKEILHGLNGSFRSGELTAIMGPSGAGKSTLL 158
            ::.:|||.::..     :|...|::.....|.   :.|.||.......::|||:|.||||||:||
Mouse   463 EYFEPVDPEYQGKEAIRIRNIKKEYKGKSGKV---KALKGLFLDIYESQITAILGHSGAGKSSLL 524

  Fly   159 NVMSGFCSTGVSGDIRVNRKPMAPSSE--RFRQMLCYIHQDDLLRPQLLVGEIMLLAAHLKLGFK 221
            |::||. ....:|.:.|..|.::...:  ..|:.:....|.::....|.|.|.:.|.|      |
Mouse   525 NILSGL-YVPTAGSVTVYNKNLSDMQDLKEIRKAIGVCPQHNVQFDALTVKENLTLFA------K 582

  Fly   222 VTKAYKMDL---IKHILSLLGLDHRYNVPTGKLSGGQKKRLAIALELISNPPVLYLDEPTTGLDS 283
            :......|:   ::.|||.|.:.:..:.....||.|||::|...:..:.:|.:|.|||||.|||.
Mouse   583 IKGILPQDVEQEVQQILSELDMQNIRDDLAEHLSEGQKRKLTFGIATVGDPQILLLDEPTVGLDP 647

  Fly   284 SSCSSCVALLKKLASQGHTIVCTIHQPSALIFEMFDKLYTVVDGHCMYQGPVRELVPFLADQQLV 348
            .|.......||:..:. |.|:.:.        :..|:...:.|         |:::  :|:..|.
Mouse   648 FSRQRIWGFLKERRAD-HVILFST--------QFMDEADILAD---------RKVL--IANGALK 692

  Fly   349 CP------------SYHNPADYLLEVAVGEHQRDLNELIHAANKKYYEDVDRHRYMSSDDMARLV 401
            |.            .||      |.:.:.|                           :.|..||.
Mouse   693 CTGSSVFLKRKWGLGYH------LSLFMDE---------------------------TCDSERLT 724

  Fly   402 ESIKENMG-GKAVVKTSEALAAF----AAAQFSSF--DYVKPSPQELALEEIKA---------LS 450
            ..|..::. .|...||.|.|...    ..::|..|  |..|.|.|.|...|:..         |.
Mouse   725 SFINHHIPYAKLKAKTKEKLVYILPLERTSEFPEFFSDLDKYSGQGLMSYEVSMSTLNDVFLNLE 789

  Fly   451 GGPESADPDLLEKNLRPQPQPLAKAGELARPPNAIRSASFLMQYVLLMQ--RILICA-------- 505
            |.| |...|..::......:.|... |:|.|     |.|.:.:.|..|.  |:.:||        
Mouse   790 GEP-STKQDFEKRETATDSESLNDM-EVAYP-----SLSQVQETVSTMSLWRMQVCAIARLRILK 847

  Fly   506 ---KRNYFLLLARIFSHIFIGVVFGYLYMNVGNNAQSVLGNYVYLYGSTLLLVYTGKMAVVLTFP 567
               :|..||::                               :.|.|..||             |
Mouse   848 LKRERKAFLII-------------------------------LLLLGIALL-------------P 868

  Fly   568 LEIDMLTR---EHFNRW-YKLGPYFLSLISFEIPFQSLCTAMYIIISVHLTGNDATDSFR 623
            |.|:.:..   |..|.| :|...||||  ..::| |.|.|::.:|.:......|...|.:
Mouse   869 LVIEYVANALLEVKNNWEFKTDLYFLS--PGQLP-QGLRTSLLVINNTESNIEDFLQSLK 925

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17646NP_608618.1 ABCG_EPDR 103..333 CDD:213180 63/239 (26%)
3a01204 123..765 CDD:273361 124/551 (23%)
ABC2_membrane 497..698 CDD:279410 29/144 (20%)
Abca6NP_671751.2 rim_protein <169..1600 CDD:130324 129/580 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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