DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rim2 and SCaMC

DIOPT Version :10

Sequence 1:NP_608615.1 Gene:Rim2 / 33350 FlyBaseID:FBgn0031359 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_729802.1 Gene:SCaMC / 39415 FlyBaseID:FBgn0052103 Length:583 Species:Drosophila melanogaster


Alignment Length:364 Identity:87/364 - (23%)
Similarity:137/364 - (37%) Gaps:108/364 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 HLIAGGSAGTVGAVVTCPLEVVKTRLQSSTAFMTPSRLAENAGGGPANGGQSELLRPEQRRKLST 75
            ||:|||.||.|....|.||:.:|..||..|                            ||     
  Fly   288 HLVAGGIAGAVSRTCTAPLDRIKVYLQVQT----------------------------QR----- 319

  Fly    76 TILRNRSQPQVIGGVRRIMAISHCGISSTTPKSMSIVQCLRHIVQNE-GPRALFKGLGPNLVGVA 139
                              |.||.|                .||:.|| |.|::::|.|.|::.:|
  Fly   320 ------------------MGISEC----------------MHIMLNEGGSRSMWRGNGINVLKIA 350

  Fly   140 PSRAIYFCTYSQTKNTL------NSLGFVERDSPLVHIMSAASAGFVSSTATNPIWFVKTRMQLD 198
            |..|..|..|.|.|..:      ..:..|||      ..:.|:||.:|.|...|:..:|||:.|.
  Fly   351 PETAFKFAAYEQMKRLIRGDDGSRQMSIVER------FYAGAAAGGISQTIIYPMEVLKTRLALR 409

  Fly   199 YNSKVQMTVRQCIERVYAQGGVAAFYKGITASYFGICE-TMVHFVIYEFIKSKLLEQRNQRHTDT 262
            ...: ...:.....::|.|.||.:||:|...:..||.. ..:...:||.:|.:.:...     |.
  Fly   410 RTGQ-YAGIADAAVKIYKQEGVRSFYRGYVPNILGILPYAGIDLAVYETLKRRYIANH-----DN 468

  Fly   263 KGSRDFLEFMMAGAVSKTIASCIAYPHEVARTRLREE-----------------GNKYNSFWQTL 310
            .....||..:..|:.|.|:....:||..:.||||:.:                 .:..:|..:|:
  Fly   469 NEQPSFLVLLACGSTSSTLGQLCSYPLALVRTRLQAQAAETIANQKRKTQIPLKSSDAHSGEETM 533

  Fly   311 ----HTVWKEEGRAGLYRGLATQLVRQIPNTAIMMATYE 345
                ..:.::||..|||||:....::.:|..:|....||
  Fly   534 TGLFRKIVRQEGLTGLYRGITPNFLKVLPAVSISYVVYE 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rim2NP_608615.1 Mito_carr 8..156 CDD:395101 37/145 (26%)
Mito_carr 163..253 CDD:395101 24/90 (27%)
Mito_carr 268..355 CDD:395101 24/99 (24%)
SCaMCNP_729802.1 FRQ1 114..242 CDD:444056
PTZ00169 290..559 CDD:240302 81/347 (23%)
Blue background indicates that the domain is not in the aligned region.

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