DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rim2 and hpo-12

DIOPT Version :10

Sequence 1:NP_608615.1 Gene:Rim2 / 33350 FlyBaseID:FBgn0031359 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001379467.1 Gene:hpo-12 / 36804989 WormBaseID:WBGene00016588 Length:313 Species:Caenorhabditis elegans


Alignment Length:187 Identity:52/187 - (27%)
Similarity:85/187 - (45%) Gaps:30/187 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 SAGFVSSTATNPIWFVKTRMQLD------YNSKVQMTVRQCIERVYAQGGVAAFYK------GIT 228
            ::|.|:.....|:..:|.|.||.      ..|.....|.|.|..:..:.|..||:|      |::
 Worm    24 ASGIVTRMIIQPLDVLKIRFQLQEEPIRGKKSGKYKGVMQSIFLITREEGAHAFWKGHIPAQGLS 88

  Fly   229 ASYFGICETMVHFVIYEFIK---SKLLEQRNQRHTDTKGSRDFLEFMMAGAVSKTIASCIAYPHE 290
            |:|     .:|.|..:|::.   :|::...||   ..:.:.||    ..||:|..:|...|.|.:
 Worm    89 ATY-----GLVQFSSFEWLSQQAAKVIPADNQ---SVRSTSDF----ACGALSGCLAMTAAMPLD 141

  Fly   291 VARTRLREEGNKYNSFWQTLHTV---WKEEGRAGLYRGLATQLVRQIPNTAIMMATY 344
            |.||||..:...:..:..|:|.|   |::||.||.:||....:|:..|.|.:..|.|
 Worm   142 VIRTRLVAQKAGHAVYTGTMHAVKHIWEKEGIAGYFRGWVPSVVQIAPFTGMQFALY 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rim2NP_608615.1 Mito_carr 8..156 CDD:395101
Mito_carr 163..253 CDD:395101 22/91 (24%)
Mito_carr 268..355 CDD:395101 27/80 (34%)
hpo-12NP_001379467.1 Mito_carr 11..102 CDD:395101 21/82 (26%)
Mito_carr 115..209 CDD:395101 29/91 (32%)
Mito_carr 216..309 CDD:395101
Blue background indicates that the domain is not in the aligned region.

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