DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rim2 and colt

DIOPT Version :9

Sequence 1:NP_608615.1 Gene:Rim2 / 33350 FlyBaseID:FBgn0031359 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_477221.1 Gene:colt / 33470 FlyBaseID:FBgn0019830 Length:306 Species:Drosophila melanogaster


Alignment Length:384 Identity:83/384 - (21%)
Similarity:138/384 - (35%) Gaps:122/384 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QNTADTLIHLIAGGSAGTVGAVVTCPLEVVKTRLQSSTAFMTPSRLAENAGGGPANGGQSELLRP 67
            :..|:.:...:.||..|....:...||:.:|.|||:...              ||.|.|      
  Fly    10 ERKANPVKSFLTGGFGGICNVLSGHPLDTIKVRLQTMPR--------------PAPGEQ------ 54

  Fly    68 EQRRKLSTTILRNRSQPQVIGGVRRIMAISHCGISSTTPKSMSIVQCLRHIVQNEGPRALFKGLG 132
                                                  |.......|....::|||.|.|:||:.
  Fly    55 --------------------------------------PLYRGTFDCAAKTIKNEGVRGLYKGMS 81

  Fly   133 PNLVGVAPSRAIYFCTYSQTKNTLNSLGFVERDSPLVH---IMSAASAGFVSSTATNPIWFVKTR 194
            ..|.||||..|:.|..|:..|. |...|   .|:.|.:   .::.:.:|..|:....|...:|..
  Fly    82 APLTGVAPIFAMCFAGYALGKR-LQQRG---EDAKLTYPQIFVAGSFSGLFSTLIMAPGERIKVL 142

  Fly   195 MQLD--------YNSKVQMTVRQCIERVYAQGGVAAFYKGITASYFGICETM--------VHFVI 243
            :|..        ||..:     .|..::|.:||:.:.:|       |.|.||        ::|::
  Fly   143 LQTQQGQGGERKYNGMI-----DCAGKLYKEGGLRSVFK-------GSCATMLRDLPANGLYFLV 195

  Fly   244 YEFI----KSKLLEQRNQRHTDTKGSRDFLEFMMAGAVSKTIASCIAYPHEVARTRLRE--EGNK 302
            ||.:    |||         ::| |.......:.||.|:......:..|.:|.::||:.  ||  
  Fly   196 YEALQDVAKSK---------SET-GQISTASTIFAGGVAGMAYWILGMPADVLKSRLQSAPEG-- 248

  Fly   303 YNSFWQTLHTVWKE----EGRAGLYRGLATQLVRQIPNTAIMMATYEAVVYVLTRRFNN 357
              ::...:.:|:|:    :|...||||:...::|..|..|......|     |..:|.|
  Fly   249 --TYKHGIRSVFKDLIVKDGPLALYRGVTPIMLRAFPANAACFFGIE-----LANKFFN 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rim2NP_608615.1 Mito_carr 8..156 CDD:278578 31/147 (21%)
Mito_carr 163..253 CDD:278578 24/112 (21%)
Mito_carr 268..355 CDD:278578 21/92 (23%)
coltNP_477221.1 Mito_carr 12..107 CDD:395101 33/153 (22%)
Mito_carr 112..202 CDD:395101 20/101 (20%)
Mito_carr 210..299 CDD:395101 22/97 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45441766
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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