DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rim2 and PMP34

DIOPT Version :10

Sequence 1:NP_608615.1 Gene:Rim2 / 33350 FlyBaseID:FBgn0031359 Length:365 Species:Drosophila melanogaster
Sequence 2:XP_308358.4 Gene:PMP34 / 1269711 VectorBaseID:AGAMI1_003049 Length:324 Species:Anopheles gambiae


Alignment Length:367 Identity:87/367 - (23%)
Similarity:141/367 - (38%) Gaps:96/367 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IHLIAGGSAGTVGAVVTCPLEVVKTRLQSSTAFMTPSRLAENAGGGPANGGQSELLRPEQRRKLS 74
            :|.::|.:...:......||:.|::|||                          |..||:|:.||
Mosquito    16 VHAVSGSAGSVIAMSAFYPLDTVRSRLQ--------------------------LEEPERRKALS 54

  Fly    75 TTILRNRSQPQVIGGVRRIMAISHCGISSTTPKSMSIVQCLRHIVQNEGPRALFKGLGPNLVGVA 139
            |.                                    :.||.::..||...|::||.|.|..:.
Mosquito    55 TW------------------------------------RVLRSLIDEEGFETLYRGLVPVLESLC 83

  Fly   140 PSRAIYFCTYSQTKNTLNSLGFVERDSPLVHIMSAASAGFVSSTATNPIWFVKTRMQLD------ 198
            .|..:||.|:...|......|    .|.|..::..:.||.|:...|.|.|.|.||:::.      
Mosquito    84 ISNFVYFYTFHSLKALRGGGG----QSALGDLLLGSLAGVVNVLTTTPCWVVNTRLKMKGLGQQH 144

  Fly   199 ---------YNSKVQMT-VRQCIERVYAQGGVAAFYKGITASYFGICETMVHFVIYEFIKSKLLE 253
                     ..|.||.. :...::.:....||...:.|...|...:....:.|::||.:|.:|..
Mosquito   145 GKRANGPVAPGSDVQYDGLLDGLQYIARTEGVRGLWAGAVPSLMLVINPAIQFMVYESLKRRLTA 209

  Fly   254 QRNQRHTDTKGSRDFLEFMMAGAVSKTIASCIAYPHEVARTRLREEGNKYNSF--------WQTL 310
            ..|     .|.|...:.|...|||:|.||:.:.||.::.:|:|| .||...|.        .|.|
Mosquito   210 AGN-----AKSSPSAITFFSIGAVAKMIATVLTYPLQLVQTKLR-HGNTDRSLNLPPNVDTVQML 268

  Fly   311 HTVWKEEGRAGLYRGLATQLVRQIPNTAIMMATYEAVVYVLT 352
            ..:.|.:|.|||:|||..:|::.:...|:|...||.:...:|
Mosquito   269 LIILKRQGVAGLFRGLEAKLLQTVLTAALMFMAYEKIARFVT 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rim2NP_608615.1 Mito_carr 8..156 CDD:395101 29/145 (20%)
Mito_carr 163..253 CDD:395101 23/105 (22%)
Mito_carr 268..355 CDD:395101 31/93 (33%)
PMP34XP_308358.4 Mito_carr 15..99 CDD:395101 29/144 (20%)
Mito_carr 106..208 CDD:395101 22/101 (22%)
Mito_carr 223..310 CDD:395101 29/87 (33%)

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