DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17660 and Tmem87b

DIOPT Version :10

Sequence 1:NP_608612.3 Gene:CG17660 / 33347 FlyBaseID:FBgn0031356 Length:536 Species:Drosophila melanogaster
Sequence 2:NP_001178783.1 Gene:Tmem87b / 362212 RGDID:1307907 Length:555 Species:Rattus norvegicus


Alignment Length:556 Identity:227/556 - (40%)
Similarity:319/556 - (57%) Gaps:50/556 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQGSATLLVVALALLLG-PASTAGKSDPGMVDVLVTTDLPSIREQRPLLANTKIYAQIKGCTSNV 64
            :...|.:|.|||.||.. ||:.....:.|:....|......:..::.:..:|.|...:|..:.:.
  Rat    19 LPAGAQMLRVALCLLCWVPAAVDAVPELGLWTRTVNDKSGPLIFRKTMFNSTDIRFSVKSFSCSG 83

  Fly    65 ESNLTITFRLTEHPC----------IFDDRTLQAIAQNATLQKNATINNVITEITRTYPCNGLIV 119
            ....||.:.|..|.|          :|....|.|........||.......:|            
  Rat    84 PVKFTIEWHLKYHTCHNEYPELEEELFQKHELHADGDVCAYFKNIDCWTTKSE------------ 136

  Fly   120 LAINKDKVVEGSAIPTPEPKH-PMLEHKHPLSPTTNPIASVKEDGIYEIEVNIAAGPS-AQFSAV 182
               |.|...:..|.|:...|. ..:.:......:.:.:|..::||.:...|:|....: |.:...
  Rat   137 ---NLDCSSDSQAFPSLNNKELTGIRNISSQEGSMDVVARTQKDGFHIFIVSIKTEKTDAIWDLN 198

  Fly   183 VHIEFLGPHGFISAIDWPFLPFYLIMCIVYVIFGIIWLFVSFAQWRDLLRIQFWIGGVILLGMLE 247
            |.:..:||||:|||.|||.:.||::|||||:::|::||..|...|:|:|||||||..||.|||||
  Rat   199 VSLSMVGPHGYISASDWPLMIFYMVMCIVYILYGVLWLLWSACYWKDILRIQFWIAAVIFLGMLE 263

  Fly   248 KAFFYAEYQTLTNKGVAVQHAELVAEFVSCAKRTLARMLVIIMSLGFGIVKPRLGPMLHRVVGVG 312
            ||.||:|||.:.:.|::.|...:.||.:|..||||||:||||:|||:||||||||.::|||:|:|
  Rat   264 KAVFYSEYQNINSTGLSTQGLLIFAELISALKRTLARLLVIIVSLGYGIVKPRLGTVMHRVIGLG 328

  Fly   313 TLYFVLACVESYLRITNVKTDRSELLVA--SIPLAVLDTGICWWIFTSLVQTTRTLRLRRNMVKL 375
            .||.:.|.:|..:|:..   ....|.||  .|.|||:|:...|:||.||.||.:|||||:|.||.
  Rat   329 LLYLIFAAIEGVMRVIG---GSKHLAVALTDIVLAVIDSISVWFIFISLAQTMKTLRLRKNTVKF 390

  Fly   376 SLYRHFTNTLIFAVIASVIFMLFALRLRRVENCTPGWRDIWVDTGFWHILFSVLLLVIMILWRPT 440
            ||||||||||||||:||::||::..:..|:..|...|.::|||..||..|||::|:|||.||||:
  Rat   391 SLYRHFTNTLIFAVLASIVFMVWTTKTFRIAKCQSDWMELWVDDAFWSFLFSLILIVIMFLWRPS 455

  Fly   441 NNNQRYAFTPLLDNPEDEDDEDEEDQFVAD--AYGVKMRG----QNGTPKTSTTSRNATTTEEDD 499
            .|||||||.||:|   |.|||.||....::  ..|:|:|.    .|||.|  .||.|.    ::|
  Rat   456 ANNQRYAFMPLID---DSDDEVEEFMVTSENLTEGIKLRASKTVSNGTAK--PTSENF----DED 511

  Fly   500 LRWVEENIPSSMADSALPIL-DSDEEIINTKFEVSK 534
            |:|||||||||..|.|||:| ||||||: |:.|:::
  Rat   512 LKWVEENIPSSFTDVALPVLVDSDEEIM-TRSEIAE 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17660NP_608612.3 Lung_7-TM_R 160..444 CDD:369089 147/286 (51%)
Tmem87bNP_001178783.1 Lung_7-TM_R 175..459 CDD:369089 147/286 (51%)

Return to query results.
Submit another query.