DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17660 and Tmem87b

DIOPT Version :9

Sequence 1:NP_608612.3 Gene:CG17660 / 33347 FlyBaseID:FBgn0031356 Length:536 Species:Drosophila melanogaster
Sequence 2:NP_001178783.1 Gene:Tmem87b / 362212 RGDID:1307907 Length:555 Species:Rattus norvegicus


Alignment Length:556 Identity:227/556 - (40%)
Similarity:319/556 - (57%) Gaps:50/556 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQGSATLLVVALALLLG-PASTAGKSDPGMVDVLVTTDLPSIREQRPLLANTKIYAQIKGCTSNV 64
            :...|.:|.|||.||.. ||:.....:.|:....|......:..::.:..:|.|...:|..:.:.
  Rat    19 LPAGAQMLRVALCLLCWVPAAVDAVPELGLWTRTVNDKSGPLIFRKTMFNSTDIRFSVKSFSCSG 83

  Fly    65 ESNLTITFRLTEHPC----------IFDDRTLQAIAQNATLQKNATINNVITEITRTYPCNGLIV 119
            ....||.:.|..|.|          :|....|.|........||.......:|            
  Rat    84 PVKFTIEWHLKYHTCHNEYPELEEELFQKHELHADGDVCAYFKNIDCWTTKSE------------ 136

  Fly   120 LAINKDKVVEGSAIPTPEPKH-PMLEHKHPLSPTTNPIASVKEDGIYEIEVNIAAGPS-AQFSAV 182
               |.|...:..|.|:...|. ..:.:......:.:.:|..::||.:...|:|....: |.:...
  Rat   137 ---NLDCSSDSQAFPSLNNKELTGIRNISSQEGSMDVVARTQKDGFHIFIVSIKTEKTDAIWDLN 198

  Fly   183 VHIEFLGPHGFISAIDWPFLPFYLIMCIVYVIFGIIWLFVSFAQWRDLLRIQFWIGGVILLGMLE 247
            |.:..:||||:|||.|||.:.||::|||||:::|::||..|...|:|:|||||||..||.|||||
  Rat   199 VSLSMVGPHGYISASDWPLMIFYMVMCIVYILYGVLWLLWSACYWKDILRIQFWIAAVIFLGMLE 263

  Fly   248 KAFFYAEYQTLTNKGVAVQHAELVAEFVSCAKRTLARMLVIIMSLGFGIVKPRLGPMLHRVVGVG 312
            ||.||:|||.:.:.|::.|...:.||.:|..||||||:||||:|||:||||||||.::|||:|:|
  Rat   264 KAVFYSEYQNINSTGLSTQGLLIFAELISALKRTLARLLVIIVSLGYGIVKPRLGTVMHRVIGLG 328

  Fly   313 TLYFVLACVESYLRITNVKTDRSELLVA--SIPLAVLDTGICWWIFTSLVQTTRTLRLRRNMVKL 375
            .||.:.|.:|..:|:..   ....|.||  .|.|||:|:...|:||.||.||.:|||||:|.||.
  Rat   329 LLYLIFAAIEGVMRVIG---GSKHLAVALTDIVLAVIDSISVWFIFISLAQTMKTLRLRKNTVKF 390

  Fly   376 SLYRHFTNTLIFAVIASVIFMLFALRLRRVENCTPGWRDIWVDTGFWHILFSVLLLVIMILWRPT 440
            ||||||||||||||:||::||::..:..|:..|...|.::|||..||..|||::|:|||.||||:
  Rat   391 SLYRHFTNTLIFAVLASIVFMVWTTKTFRIAKCQSDWMELWVDDAFWSFLFSLILIVIMFLWRPS 455

  Fly   441 NNNQRYAFTPLLDNPEDEDDEDEEDQFVAD--AYGVKMRG----QNGTPKTSTTSRNATTTEEDD 499
            .|||||||.||:|   |.|||.||....::  ..|:|:|.    .|||.|  .||.|.    ::|
  Rat   456 ANNQRYAFMPLID---DSDDEVEEFMVTSENLTEGIKLRASKTVSNGTAK--PTSENF----DED 511

  Fly   500 LRWVEENIPSSMADSALPIL-DSDEEIINTKFEVSK 534
            |:|||||||||..|.|||:| ||||||: |:.|:::
  Rat   512 LKWVEENIPSSFTDVALPVLVDSDEEIM-TRSEIAE 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17660NP_608612.3 Lung_7-TM_R 160..444 CDD:284280 147/286 (51%)
Tmem87bNP_001178783.1 Lung_7-TM_R 175..459 CDD:369089 147/286 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337140
Domainoid 1 1.000 313 1.000 Domainoid score I1258
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H69513
Inparanoid 1 1.050 379 1.000 Inparanoid score I2002
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1448608at2759
OrthoFinder 1 1.000 - - FOG0001340
OrthoInspector 1 1.000 - - otm46145
orthoMCL 1 0.900 - - OOG6_101701
Panther 1 1.100 - - O PTHR21229
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1432
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.900

Return to query results.
Submit another query.