DRSC/TRiP Functional Genomics Resources

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Protein Alignment chinmo and br

DIOPT Version :9

Sequence 1:NP_001188680.1 Gene:chinmo / 33343 FlyBaseID:FBgn0086758 Length:840 Species:Drosophila melanogaster
Sequence 2:NP_001162638.2 Gene:br / 44505 FlyBaseID:FBgn0283451 Length:1011 Species:Drosophila melanogaster


Alignment Length:1007 Identity:219/1007 - (21%)
Similarity:344/1007 - (34%) Gaps:352/1007 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDPQQQFCLKWNSFSSNLAITFSNLFKSDLLADVILSCDGVVFKAHKLILAACSKKFADLFENTP 65
            ||..|.|||:||::.|::...|.||...:...||.|:|:|...|||:::|:|||..|.:|.::||
  Fly     1 MDDTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKSTP 65

  Fly    66 TNGQC---VIILEATTPDNMAALLEFMYKGEVHVSQEALNSFLKSAESLQVKGLSTETGRLAAQQ 127
                |   ||:|:.....::.||:||:|.|||:|.|::|.||||:||.|:|.||:.:    .|:.
  Fly    66 ----CKHPVILLQDVNFMDLHALVEFIYHGEVNVHQKSLQSFLKTAEVLRVSGLTQQ----QAED 122

  Fly   128 AQQHMGDLSPLDSPTGRRSV-----------RNSL--SGGSSSIVPGGVGIGLGGGATGANSMSG 179
            ...|:..:..|.:..||..:           ..||  .||||::..     ..|.|:....::..
  Fly   123 THSHLAQIQNLANSGGRTPLNTHTQSLPHPHHGSLHDDGGSSTLFS-----RQGAGSPPPTAVPS 182

  Fly   180 M--GIGNG-LSLAGMAAGGGMAAAANAAASSLSTLAASANIVDRCGSAGAN----------IISG 231
            :  .|.|. |....|......||||...:.:...|..|.|.:...|:.|:.          :.:.
  Fly   183 LPSHINNQLLKRMAMMHRSSAAAAAEETSHAFKRLRGSDNSLPLSGAVGSGSNNNSPDLPPLHAR 247

  Fly   232 SAA----------------------------GIGGSHSGGAGNGSGTVGIGGNGV---------- 258
            ||:                            |..|:.:.|.|||:|.....|||:          
  Fly   248 SASPQQTPADFSTIKHHNNNNTPPLKEEKRNGPTGNGNSGNGNGNGNGASNGNGISISDKLGSLT 312

  Fly   259 ---------------------------------------------GSGGGNNGPISLGS----GA 274
                                                         .||.|..|.:|.|:    |.
  Fly   313 PSPLARAGADDVKSEPMDMVCSNNNANANDEHSNDSTGEHDANRSSSGDGGKGSLSSGNDEEIGD 377

  Fly   275 G-AAHH------------------------------LGGSTGILKQECDSLMHPGGSSSSS---- 304
            | |:||                              ||.:|. |:|..|..:.|.|.|:.|    
  Fly   378 GLASHHAAPQFIMSPAENKMFHAAAFNFPNIDPSALLGLNTQ-LQQSGDLAVSPQGGSTGSLLSG 441

  Fly   305 -----GMGYTHVPPIYRPINYEPPRKRAIVRSPYSEQEQRGS---VLRDGSKSSECPSPINKPPY 361
                 |.|.|       |.|...........:...:.||:.|   :|:....|    :|....|.
  Fly   442 VIVPGGSGGT-------PSNSSSNNNNNNSNNQQQKVEQQSSPHQLLQQQHHS----TPHTNSPQ 495

  Fly   362 HRPSSSASSTAPTEADTMH----SERASPQSSR----YENHS--PSTTAGNGNATSSLERIVKSE 416
            .:.....|.....::..:|    |||:..:||:    ...||  ||.||.........||  :.|
  Fly   496 LKQEQPKSGGGSCKSSDLHIAAGSERSLSRSSQGMPDAGGHSATPSPTAAYHKRERERER--ERE 558

  Fly   417 RNNGSANEANDDDRELMDESTDNGAEDLRVKLENLKYSPPPPPNSNTS--STTPNTLLEN----- 474
            |......|.:.|....::.....|             ||||||.|:.|  ...|.:||.:     
  Fly   559 RERERERERSLDHERDLERPGGTG-------------SPPPPPPSHHSHFGQHPLSLLPSHHQLH 610

  Fly   475 -------------------------LKADGT------LSSNLAASIAPADMLNVWN--------- 499
                                     |...|:      |..:..||::|:..::..:         
  Fly   611 ATHHELSAAAAHHAHAHAHAAHAHALARAGSPMEHHHLLHHRRASLSPSGAVSSASGAGGRGGGA 675

  Fly   500 -------ATKMNNKNSVNTADGKKL----------KCLYCDRLYGYETNLRAHIRQRH-QGI-RV 545
                   .:.:::..:.:.|...:|          :|..|.:|...:..|:.|..|:| |.: ..
  Fly   676 GGPGGPGGSLLSSVRAQDVAQANRLLLPLPLNACHRCDVCGKLLSTKLTLKRHKEQQHLQPLNNA 740

  Fly   546 PCPFCERTFTRNNTVRRHIAREHKQE--------------------------------------- 571
            .|..|.:.|...|::..|.:..|:::                                       
  Fly   741 VCNLCHKVFRTLNSLNNHKSIYHRRQKNHHSYFHHGAGVSQAGSPGSRLHQSLSSLSAAAAAANN 805

  Fly   572 -IGLAAGATIAPAHLAAAAAASAAATAAASNHSPXEAAATAAASVVMNANKEAA--KQRKRKTLK 633
             :.:..|:.......|.||||:|||.||....|| ..||..|.....:..:.||  :|:::::..
  Fly   806 SVNVGGGSVGGAGGNAVAAAAAAAAAAAELLLSPIVGAAAVAGGTASSTLQLAAAHQQQQQQSSP 870

  Fly   634 MALEKCM--------------------QRRDAMVAETTTGAGGDGAEAGGESG--EAVDGAGSEE 676
            ..::.||                    ....|..|.....|||.|...||...  |:::|.|.|.
  Fly   871 GIVKPCMDFLXDQQQLLQQLFHVALNNSAAAAAAAAAAAAAGGSGGGPGGVGAGPESINGGGQEY 935

  Fly   677 GA--GSEGTEPLTYEQQQQRMHQELTQQIRAA 706
            |.  |..||..:           :|||...||
  Fly   936 GGVQGPSGTPTV-----------DLTQLEHAA 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chinmoNP_001188680.1 BTB 22..116 CDD:279045 42/96 (44%)
BTB 33..116 CDD:197585 39/85 (46%)
C2H2 Zn finger 519..540 CDD:275368 6/20 (30%)
C2H2 Zn finger 547..568 CDD:275368 5/20 (25%)
brNP_001162638.2 BTB 22..118 CDD:279045 44/99 (44%)
BTB 33..118 CDD:197585 41/88 (47%)
C2H2 Zn finger 712..729 CDD:275368 4/16 (25%)
C2H2 Zn finger 742..763 CDD:275368 5/20 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9675
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1229475at2759
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 1 1.000 - - otm40394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
66.020

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