DRSC/TRiP Functional Genomics Resources

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Protein Alignment chinmo and Btbd18

DIOPT Version :9

Sequence 1:NP_001188680.1 Gene:chinmo / 33343 FlyBaseID:FBgn0086758 Length:840 Species:Drosophila melanogaster
Sequence 2:NP_001138572.1 Gene:Btbd18 / 100270744 MGIID:3650217 Length:723 Species:Mus musculus


Alignment Length:505 Identity:107/505 - (21%)
Similarity:166/505 - (32%) Gaps:153/505 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LAITFSNLF---KSDLLADVILSCDGVVFKAHKLILAACSKKFADLFE-NTPTNGQCVII----L 74
            |.:.|..|.   :|.:..|.:|..:|....||..||:|||..|.:..| ..|..|:.|::    |
Mouse    17 LRVAFLQLHHQQQSGVFCDALLQAEGEAVPAHCCILSACSPFFTERLERERPVQGRKVVLEMGGL 81

  Fly    75 EATTPDNMAALLEFMYKGEVHVSQEALNSFLKSAESLQVKGLST---ETGRLAAQQAQQHMGDLS 136
            :..|   :..|::|:|..|:.||||.....|.:|..|:|..|.|   |.|:|             
Mouse    82 KIQT---LRKLVDFLYTSEMEVSQEEAQDVLSAARQLRVSELETLQLEGGKL------------- 130

  Fly   137 PLDSPTGRRSVRNSLSGGSSSIVPGGVGIGLGGGATGANSM-----------SGMGIGNGLSLAG 190
             :.:|.|||..|..|...:::.:...|        .|..|.           |.:|.....||..
Mouse   131 -VKAPQGRRLNRECLQPPAAAPISARV--------VGPKSRPQTPLPVTQTPSPLGAVRLKSLGE 186

  Fly   191 MAAGGGMAAAANAAASSLSTLAASANIVDRCGSAGANIISGSAAGIGGSHSGGAGNGSGTVGIGG 255
            ...........||.:.|.:.|...|.:   |      :...|.:.......|.....|       
Mouse   187 EEGAHKKTNLPNADSLSDTQLKKKARV---C------LTQESRSSPSSQREGPKETKS------- 235

  Fly   256 NGVGSGGGNNGPISLG-----------------SGAGAAHHLGGST--GILKQECDSLMHPGG-- 299
                    |.||.:|.                 |.:..:.|:..||  .||.........||.  
Mouse   236 --------NPGPTALPSLYPSVDEQLLPRKIRLSRSKPSPHVYTSTPSSILSGPSSMPTAPGRRL 292

  Fly   300 ------SSSSSGMGYTHVPPIYRPINYEP-----------PRKRAIVRSPYSEQEQRGSVLRDGS 347
                  |..:.|:. ...|...||:...|           .::...:|:|.|...:.|.|.|...
Mouse   293 WRQRTVSKEAQGVD-KQKPGEVRPLQSTPDPSDVGKPAENKKQSPELRAPTSSSVEEGQVGRVKL 356

  Fly   348 K---SSECPSPINKPPYHRPSSSASSTAPTEAD----TMHSE-------------RASPQSSRYE 392
            :   :..|...:.:||......|.....|::.:    |:.|.             :.||:|.|.:
Mouse   357 RKIVNGTCWEVVQEPPLRNTQDSPQILEPSDVEEPSGTLLSSVNEQEIPARIQLCQDSPESPRLQ 421

  Fly   393 ------NHSPSTTAGNGNATSSLERIVKSERNN-----GSANEANDDDRE 431
                  :|||.            ..:||||..:     |..::.|.|.||
Mouse   422 DILLSASHSPD------------HPMVKSEFGSSPMLTGKESDLNIDCRE 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chinmoNP_001188680.1 BTB 22..116 CDD:279045 32/101 (32%)
BTB 33..116 CDD:197585 29/87 (33%)
C2H2 Zn finger 519..540 CDD:275368
C2H2 Zn finger 547..568 CDD:275368
Btbd18NP_001138572.1 BTB_POZ_BTBD18 20..138 CDD:349602 39/134 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 150..176 4/33 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 188..350 30/186 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 370..394 4/23 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 603..637
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 699..723
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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