DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment haf and LRRC59

DIOPT Version :9

Sequence 1:NP_001356954.1 Gene:haf / 33339 FlyBaseID:FBgn0261509 Length:1347 Species:Drosophila melanogaster
Sequence 2:NP_060979.2 Gene:LRRC59 / 55379 HGNCID:28817 Length:307 Species:Homo sapiens


Alignment Length:111 Identity:42/111 - (37%)
Similarity:58/111 - (52%) Gaps:13/111 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 NLQDNL-----------LADVPVEALKVLGKLNLLDLSKNQLSHIPDDAFVGLTKLSTLKLNDNN 188
            ||:|.|           |.:|||:.|..|.|..:||||.|:|:.:|.| |.|||.|..|.|:.|.
Human    10 NLRDKLDGNELDLSLSDLNEVPVKELAALPKATILDLSCNKLTTLPSD-FCGLTHLVKLDLSKNK 73

  Fly   189 VTLASNAFRGLEQSLKNLNLKGTKQRKVPESIRGLKSLAFLDLSQN 234
            :......| |...:|::|:|...|...:|.|...||:|.:|||..|
Human    74 LQQLPADF-GRLVNLQHLDLLNNKLVTLPVSFAQLKNLKWLDLKDN 118

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hafNP_001356954.1 LRR <52..>252 CDD:227223 42/111 (38%)
leucine-rich repeat 86..105 CDD:275380
leucine-rich repeat 106..129 CDD:275380
LRR_8 131..189 CDD:338972 27/64 (42%)
leucine-rich repeat 131..154 CDD:275380 10/29 (34%)
leucine-rich repeat 155..178 CDD:275380 11/22 (50%)
leucine-rich repeat 179..202 CDD:275380 6/22 (27%)
leucine-rich repeat 203..225 CDD:275380 7/21 (33%)
leucine-rich repeat 226..253 CDD:275380 5/9 (56%)
LRR_8 254..337 CDD:338972
leucine-rich repeat 254..302 CDD:275380
leucine-rich repeat 303..326 CDD:275380
leucine-rich repeat 327..350 CDD:275380
PCC 332..>413 CDD:188093
PRK10927 <1061..>1097 CDD:236797
LRRC59NP_060979.2 LRR 1 10..31 5/20 (25%)
LRR <18..>120 CDD:227223 38/103 (37%)
leucine-rich repeat 19..40 CDD:275378 6/20 (30%)
LRR 2 40..62 11/22 (50%)
leucine-rich repeat 41..63 CDD:275378 11/22 (50%)
LRR 3 63..84 6/21 (29%)
leucine-rich repeat 64..86 CDD:275378 6/22 (27%)
LRR 4 86..107 6/20 (30%)
leucine-rich repeat 87..109 CDD:275378 7/21 (33%)
LRR 5 109..128 5/10 (50%)
InfB 135..>243 CDD:392272
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 150..241
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.