DRSC/TRiP Functional Genomics Resources

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Protein Alignment haf and CG7509

DIOPT Version :9

Sequence 1:NP_001356954.1 Gene:haf / 33339 FlyBaseID:FBgn0261509 Length:1347 Species:Drosophila melanogaster
Sequence 2:NP_647931.1 Gene:CG7509 / 38579 FlyBaseID:FBgn0035575 Length:615 Species:Drosophila melanogaster


Alignment Length:383 Identity:101/383 - (26%)
Similarity:164/383 - (42%) Gaps:61/383 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 QCDQVDFSQLLAAMNTHARLKPVDLLYVNNSTISELPDAVF---SNLSLHNLQLSSCG--IQRIA 120
            |.:.:|.       .|..:|:.:::|.::.:.|..||:::|   ..|::.|:    |.  ||...
  Fly   240 QLEDIDH-------RTFWKLRNLNILDLSKNEIGMLPESIFYHAQRLTVINM----CDNQIQNFP 293

  Fly   121 TGAFKGQESVLRNLNLQDNLLADVPVEALKVLGKLNLLDLSKNQLSHIPDDAFVGLTKLSTLKLN 185
            ....:.| .:|..|::..|.::::...:::.|.||..||...||::.|.||.|.||..|.||.|:
  Fly   294 PNLLRDQ-LMLEELDMSRNKISELSSGSIRYLTKLKTLDFGWNQIAKIDDDFFAGLRSLRTLSLH 357

  Fly   186 DNNV-TLASNAFRGLEQSLKNLNLKGTKQRKVP-ESIRGLKSLAFLDLSQNGIKELPGAGGIRVF 248
            :|.: :|:...|..| .:|..|:|...:...:. .:...|.:|..|.|.||.:..:|.    .:|
  Fly   358 NNRISSLSGTIFNNL-ANLVTLDLTTNRISHIDGNAFVELNNLNELFLGQNSMSSIPA----DLF 417

  Fly   249 DGLDALTALNLERNLIQSIGETAFAGVRKTLSSLSLLNNLLAEFPIGAVHSLKELRVLDIGFNLL 313
            ..:.|||.|.|..|.:.::....|.|: ..|..|.|.||:|..|...|...|.:|..|.|..|.|
  Fly   418 LNVSALTRLTLFSNNLTTLEADDFQGL-NNLKILLLNNNILKNFDARAFEPLSQLEKLRIDSNKL 481

  Fly   314 TSLPEAAFRGNPGITLLALDGNPLSSVPEGAFAHLNATLRGLSLGGRFLHCDCKLRWVAEWIRNG 378
            ..||..|..|...:..:.||.||                         .||||:..::|.|||..
  Fly   482 MFLPHGALHGLKNLVAVKLDKNP-------------------------WHCDCRALYLARWIREF 521

  Fly   379 DLQVTSRERNPQFCGTPPRFRDRGFYSIQPEELSCPDIADAALRGPVGLADNLKPTLP 436
            .|::...::  ..|..|   .|.|.:.:  ..|...|:.|    |......:|.|.||
  Fly   522 VLKLWDGQQ--PMCRGP---GDLGGHEV--GLLRYDDLCD----GQWASMLSLSPRLP 568

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
hafNP_001356954.1 LRR <52..>252 CDD:227223 50/197 (25%)
leucine-rich repeat 86..105 CDD:275380 5/21 (24%)
leucine-rich repeat 106..129 CDD:275380 5/24 (21%)
LRR_8 131..189 CDD:338972 21/57 (37%)
leucine-rich repeat 131..154 CDD:275380 4/22 (18%)
leucine-rich repeat 155..178 CDD:275380 11/22 (50%)
leucine-rich repeat 179..202 CDD:275380 8/23 (35%)
leucine-rich repeat 203..225 CDD:275380 4/22 (18%)
leucine-rich repeat 226..253 CDD:275380 7/26 (27%)
LRR_8 254..337 CDD:338972 28/82 (34%)
leucine-rich repeat 254..302 CDD:275380 16/47 (34%)
leucine-rich repeat 303..326 CDD:275380 9/22 (41%)
leucine-rich repeat 327..350 CDD:275380 4/22 (18%)
PCC 332..>413 CDD:188093 18/80 (23%)
PRK10927 <1061..>1097 CDD:236797