DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment haf and 18w

DIOPT Version :9

Sequence 1:NP_001356954.1 Gene:haf / 33339 FlyBaseID:FBgn0261509 Length:1347 Species:Drosophila melanogaster
Sequence 2:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0004364 Length:1385 Species:Drosophila melanogaster


Alignment Length:1357 Identity:272/1357 - (20%)
Similarity:437/1357 - (32%) Gaps:454/1357 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GRELSVQCDQVDFSQLLAAMNT--HARLKPVDLLYVNNSTISEL-PDAVFSNLSLHNLQLSSCGI 116
            |.||  |...|.|::|.:..:.  .:||:.:..|.:.::.||.| |:|:....||..|.:|...:
  Fly   209 GSEL--QTLDVSFNELRSLPDAWGASRLRRLQTLSLQHNNISTLAPNALAGLSSLRVLNISYNHL 271

  Fly   117 QRIATGAFKGQESVLRNLNLQDNLLADVPVEALKVLGKLNLLDLSKNQLS--HIPDDAFVGLTKL 179
            ..:.:.||.|.:. ||.|:||.|.|.::|...|..|.:|.:||||.|||:  |:.:..|.||.:|
  Fly   272 VSLPSEAFAGNKE-LRELHLQGNDLYELPKGLLHRLEQLLVLDLSGNQLTSHHVDNSTFAGLIRL 335

  Fly   180 STLKLNDNNVT-LASNAFRGLEQSLKNLNLKGTKQRKVPE-SIRGLKSLAFLDLSQNGIKELPGA 242
            ..|.|::|.:| :.|..|:.| ..|:.|:::......:.| :...|.:|..|:|::|.:..|.. 
  Fly   336 IVLNLSNNALTRIGSKTFKEL-YFLQILDMRNNSIGHIEEGAFLPLYNLHTLNLAENRLHTLDN- 398

  Fly   243 GGIRVFDGLDALTALNLERNLIQSIGETAFAGVRKTLSSLSLLNNLLAEFPIGAVHSLKELRVLD 307
               |:|:||..||.|.|..||:..:...||... ..|..|.|.:|.|.|.| .||..|..|:.||
  Fly   399 ---RIFNGLYVLTKLTLNNNLVSIVESQAFRNC-SDLKELDLSSNQLTEVP-EAVQDLSMLKTLD 458

  Fly   308 IGFNLLTSLPEAAFR---------------GN---------PGITLLALDGNPLSSVPEGAFAHL 348
            :|.|.::......||               ||         |.:::|.|..|.:.|:..||| ..
  Fly   459 LGENQISEFKNNTFRNLNQLTGLRLIDNRIGNITVGMFQDLPRLSVLNLAKNRIQSIERGAF-DK 522

  Fly   349 NATLRGLSLGGRFLHCD--------CKLRWV------AEWIRNGDLQVTSRERNPQFCGTPPRFR 399
            |..:..:.|...|| .|        ..|.|:      ..|..                       
  Fly   523 NTEIEAIRLDKNFL-TDINGIFATLASLLWLNLSENHLVWFD----------------------- 563

  Fly   400 DRGFYSIQPEELSCPDIAD---AALRGPVGLADNLK-PTLPSS------------PDSVE--YET 446
                |:..|..|...||..   .||.....|.:.:: .||.:|            |:|:|  :..
  Fly   564 ----YAFIPSNLKWLDIHGNYIEALGNYYKLQEEIRVTTLDASHNRITEIGAMSVPNSIELLFIN 624

  Fly   447 GTGTGTVGTGTAAS----------APVTSSVSSSTSTTTPTTT---------------------- 479
            ....|.:...|...          |.|.|.:|.:.....|.:.                      
  Fly   625 NNIIGQIQANTFVDKTRLARVDLYANVLSKISLNALRVAPVSAEKPVPEFYLGGNPFECDCSMEW 689

  Fly   480 ----TTTTTAE--------------PTTRRSTTRPPTKSTTTISATTAS------PASNPPVNGT 520
                ...||.:              |.:|.:..||       :::.:||      .:..||....
  Fly   690 LQRINNLTTRQHPHVVDLGNIECLMPHSRSAPLRP-------LASLSASDFVCKYESHCPPTCHC 747

  Fly   521 ---GTVQATSITTSSSSSSSSSTSTGHGNGKQAPGWRQGVTNGNGNSGVGGAGGLHKPQRPP--- 579
               ...:...|...:.|....:|            |...:.    :.|......|  |.|.|   
  Fly   748 CEYEQCECEVICPGNCSCFHDAT------------WATNIV----DCGRQDLAAL--PNRIPQDV 794

  Fly   580 --LVLGYPPQRGTRIDDAN---EVQVKH---------AFRQDSSVIIQWDSDTANILGFRVVYRL 630
              |.|           |.|   |::|.|         .:...|:::...:...|.::..||:: |
  Fly   795 SDLYL-----------DGNNMPELEVGHLTGRRNLRALYLNASNLMTLQNGSLAQLVNLRVLH-L 847

  Fly   631 FGEKAFKQGPPLESSE-------REFKIKN---VPAQECIIVCVISLEELHVTP---ETVPYQQ- 681
            ...|.    ..||.:|       ||..:.|   ..........::|||.|.:..   .::|:.| 
  Fly   848 ENNKL----TALEGTEFRSLGLLRELYLHNNMLTHISNATFEPLVSLEVLRLDNNRLSSLPHLQY 908

  Fly   682 -----------------CREVRTVA---------------------------------------- 689
                             |:::|.:|                                        
  Fly   909 RHSLQGLTLGRNAWSCRCQQLRELAQFVSDNAMVVRDAHDIYCLDAGIKRELELIGNLANGPDCS 973

  Fly   690 ----SQASNMDKI----------TIAASAAICGTIIVAVIVFIAASRRSRKLQSSQQKSPLPIGG 740
                :.|||:...          .:||...:...::|.:|||:  .|.|.::..        ...
  Fly   974 DLLDASASNISSSQDLAGGYRLPLLAAVLVLIFLVVVLIIVFV--FRESVRMWL--------FAH 1028

  Fly   741 LPVNCCGPTGSPGPLGSIATLSAFNNHKEWD----QVSAYSGRSIPRPRIYPVEQPD--DMRSHF 799
            ..|..|.|.....  |.:......::.|:::    .::|......|..|:. ::|.|  ...||.
  Fly  1029 YGVRVCEPRFEDA--GKLYDAIILHSEKDYEFVCRNIAAELEHGRPPFRLC-IQQRDLPPQASHL 1090

  Fly   800 SGMPGKVGKSRS---------LADGQSQHSFSNNSHRGYLGSAFPSNLVNSRPELRQSRQSLAAA 855
            ..:.| ...||.         ||...::..|.|..|....|.|....::        ...|::|.
  Fly  1091 QLVEG-ARASRKIILVLTRNLLATEWNRIEFRNAFHESLRGLAQKLVII--------EETSVSAE 1146

  Fly   856 SERMSRAS-YAGSIHGGNGGGGGLGGNGGGGGNGLPVSSLMAMSGMVGGGGPASIASSARRSRPR 919
            :|.::..| |..|:                     |.:.|:...        .......|.:.|.
  Fly  1147 AEDVAELSPYLKSV---------------------PSNRLLTCD--------RYFWEKLRYAIPI 1182

  Fly   920 SRSREQLNTTHIHNHR------PGSRYSQAGSTHTLNNYCDTSDNWTDHDMDIYMARNPTTRNGL 978
            ..|....|.|..|:.|      ||..:.||......  ||       ..:|:...:...|.    
  Fly  1183 ELSPRGNNYTLDHHERFKQPVSPGMIFRQAPPPPAY--YC-------TEEMEANYSSATTA---- 1234

  Fly   979 VPLXGRLTLSXYFNVVLNWDGIFXQYLTPTIEGTEGRGRGRRQQQQQQQQQQQQQQQHQQL---- 1039
                                       ||:...|...|..|.........:...:..:..:    
  Fly  1235 ---------------------------TPSPRPTRPGGAARIVDSMPMPMRPPSEHIYHSIESEY 1272

  Fly  1040 ----QHQQQQ------QHQHQLQQLRNERHQQRHRNDQQWEQPYQPAQQQHQRLQYYMPQTERCT 1094
                ||:...      .||||.||||..:.||               |||.|||  ..||..  .
  Fly  1273 SAYDQHEALSMIPTGLMHQHQQQQLRLHQQQQ---------------QQQQQRL--LQPQFR--A 1318

  Fly  1095 SPPDVVPR-AANFH---NSNTTSTGHNDNSNSHGSSSSSSSNIAQQQQAPLAAMTAA 1147
            .|...:|. :|..|   .|..:....:..|.:..|:|::::...||||...||.:.|
  Fly  1319 MPQQAIPAPSAPVHLRSGSGLSQASTSTQSTAQASTSAAAAQQQQQQQQQQAAGSEA 1375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hafNP_001356954.1 LRR <52..>252 CDD:227223 64/203 (32%)
leucine-rich repeat 86..105 CDD:275380 6/19 (32%)
leucine-rich repeat 106..129 CDD:275380 6/22 (27%)
LRR_8 131..189 CDD:338972 26/59 (44%)
leucine-rich repeat 131..154 CDD:275380 10/22 (45%)
leucine-rich repeat 155..178 CDD:275380 12/24 (50%)
leucine-rich repeat 179..202 CDD:275380 8/23 (35%)
leucine-rich repeat 203..225 CDD:275380 4/22 (18%)
leucine-rich repeat 226..253 CDD:275380 9/26 (35%)
LRR_8 254..337 CDD:338972 31/106 (29%)
leucine-rich repeat 254..302 CDD:275380 18/47 (38%)
leucine-rich repeat 303..326 CDD:275380 9/46 (20%)
leucine-rich repeat 327..350 CDD:275380 7/22 (32%)
PCC 332..>413 CDD:188093 17/94 (18%)
PRK10927 <1061..>1097 CDD:236797 9/35 (26%)
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380
leucine-rich repeat 92..115 CDD:275380
LRR_8 115..181 CDD:290566
leucine-rich repeat 116..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..201 CDD:275380
LRR_RI 210..464 CDD:238064 87/263 (33%)
leucine-rich repeat 212..236 CDD:275380 7/25 (28%)
LRR_8 235..295 CDD:290566 19/60 (32%)
leucine-rich repeat 237..260 CDD:275380 6/22 (27%)
leucine-rich repeat 261..284 CDD:275380 6/22 (27%)
LRR_8 283..345 CDD:290566 26/62 (42%)
leucine-rich repeat 285..308 CDD:275380 10/22 (45%)
leucine-rich repeat 309..334 CDD:275380 12/24 (50%)
LRR_8 334..393 CDD:290566 16/59 (27%)
leucine-rich repeat 335..358 CDD:275380 8/23 (35%)
leucine-rich repeat 359..382 CDD:275380 4/22 (18%)
LRR_8 382..441 CDD:290566 21/63 (33%)
leucine-rich repeat 383..406 CDD:275380 9/26 (35%)
leucine-rich repeat 407..430 CDD:275380 8/23 (35%)
LRR_8 431..488 CDD:290566 17/57 (30%)
leucine-rich repeat 431..451 CDD:275380 9/20 (45%)
leucine-rich repeat 454..477 CDD:275380 7/22 (32%)
LRR_8 477..559 CDD:290566 17/83 (20%)
leucine-rich repeat 478..499 CDD:275380 2/20 (10%)
leucine-rich repeat 502..525 CDD:275380 8/23 (35%)
leucine-rich repeat 526..548 CDD:275380 4/22 (18%)
leucine-rich repeat 590..617 CDD:275380 5/26 (19%)
leucine-rich repeat 618..641 CDD:275380 3/22 (14%)
leucine-rich repeat 642..689 CDD:275380 5/46 (11%)
LRRCT 679..736 CDD:214507 8/63 (13%)
leucine-rich repeat 775..796 CDD:275380 5/26 (19%)
LRR_8 797..852 CDD:290566 12/66 (18%)
leucine-rich repeat 797..817 CDD:275380 7/30 (23%)
leucine-rich repeat 818..841 CDD:275380 2/22 (9%)
LRR_8 841..900 CDD:290566 14/63 (22%)
leucine-rich repeat 842..865 CDD:275380 7/27 (26%)
LRR_4 866..907 CDD:289563 8/40 (20%)
leucine-rich repeat 866..889 CDD:275380 3/22 (14%)
leucine-rich repeat 890..911 CDD:275380 5/20 (25%)
TIR 1045..1183 CDD:214587 28/176 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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